BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Asclepias_curassavica_v1.0_CDs.fa 29,120 sequences; 33,043,242 total letters Query= AC06g013040.1 Length=447 Score E Sequences producing significant alignments: (Bits) Value AC06g019380.1(joined) 673 0.0 AC06g019390.1(joined) 191 3e-48 AC06g022250.1(joined) 121 5e-27 AC06g019400.1(joined) 102 2e-21 >AC06g019380.1 (joined) Length=402 Score = 673 bits (364), Expect = 0.0 Identities = 364/364 (100%), Gaps = 0/364 (0%) Strand=Plus/Minus Query 23 AGACATTAAGGAGCAAGCTGAGAGAAAGTGGTACGTTTAAATTAATCCCCAAAACGTTGG 82 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 AGACATTAAGGAGCAAGCTGAGAGAAAGTGGTACGTTTAAATTAATCCCCAAAACGTTGG 305 Query 83 CTTTGATGGCGGTGCAGAGGCAAACTGCAACATCGAGATCGGCAAGTCCTTCAAGTAGTG 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 CTTTGATGGCGGTGCAGAGGCAAACTGCAACATCGAGATCGGCAAGTCCTTCAAGTAGTG 245 Query 143 AGCAGCACGGTGTTTTTGACGGAGATCCAATAACGGCACCGATTAATCCACCGAGCAAAT 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 244 AGCAGCACGGTGTTTTTGACGGAGATCCAATAACGGCACCGATTAATCCACCGAGCAAAT 185 Query 203 TAGCACAAACTCCCAACTTTATGGTGTCTCTTGGGCAGGTTGTCTTTTCTTTAGGCACAT 262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 TAGCACAAACTCCCAACTTTATGGTGTCTCTTGGGCAGGTTGTCTTTTCTTTAGGCACAT 125 Query 263 GTGGAGGAGGTGGGCAAGCTGGCTTTGGCTTTGGCTTTGGCTTTGGCTTCGGACAATCCC 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 124 GTGGAGGAGGTGGGCAAGCTGGCTTTGGCTTTGGCTTTGGCTTTGGCTTCGGACAATCCC 65 Query 323 CGCAGGCACTGACCAGAGTGAAGAAAATAAGGTTTAGAGCCAGAAAGAGAGCTAGTTTGG 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 64 CGCAGGCACTGACCAGAGTGAAGAAAATAAGGTTTAGAGCCAGAAAGAGAGCTAGTTTGG 5 Query 383 CCAT 386 |||| Sbjct 4 CCAT 1 >AC06g019390.1 (joined) Length=423 Score = 191 bits (103), Expect = 3e-48 Identities = 274/357 (77%), Gaps = 9/357 (3%) Strand=Plus/Minus Query 27 ATTAAGGAGCAAGCTGAGAGAAAGTGGTACGTTTAAATTAATCCCCAAAACGTTGGCTTT 86 |||||| |||||||| || |||||||| || || | ||||| ||||||| |||||||| Sbjct 381 ATTAAGAAGCAAGCTAAGGGAAAGTGGAACATTAAGGTTAATGCCCAAAAGATTGGCTTT 322 Query 87 GATGGCGGTGCAGAGGCAAACTGCAACATCGAGATCGGCAAGTCCTTCAAGTAGTGAGCA 146 ||||| ||||| || ||||||||| | || || || ||||| ||||||| || | ||| Sbjct 321 AATGGCTGTGCATAGACAAACTGCAGCTTCAAGGTCAGCAAGACCTTCAATCAGAGTGCA 262 Query 147 GCACGGTGTTTTTGACGGAGATCCAATAACGGCACCGATTAATCCACCGAGCAAATTAGC 206 ||| ||| || | ||| | ||| || || |||||| || || |||||||| || || Sbjct 261 GCATGGTTTTGACGGCGGTGTTCCGATCACAATACCGATCAAACCTCCGAGCAAGTTTGC 202 Query 207 ACAAACTCCCAACTTTATGGTGTCTCTTGGGCAGGTTGTCTTTTCTTTAGGCACATG-T- 264 ||| || ||||| |||| ||| || | ||||| ||| || || |||||| ||||| | Sbjct 201 ACACACGCCCAATTTTAGGGTATCAGTAGGGCAAGTT-TC-CTT-TTTAGGAACATGATG 145 Query 265 -GGAGGAGGTGGGCA-AGC--TGGCTTTGGCTTTGGCTTTGGCTTTGGCTTCGGACAATC 320 || ||||| || || || |||||| ||||| ||||||||||| ||||| || || || Sbjct 144 AGGTGGAGGAGGACATGGCTTTGGCTTAGGCTTCGGCTTTGGCTTCGGCTTTGGGCAGTC 85 Query 321 CCCGCAGGCACTGACCAGAGTGAAGAAAATAAGGTTTAGAGCCAGAAAGAGAGCTAG 377 |||||| ||||| || |||| |||||| | ||||||||| || ||||| ||||| || Sbjct 84 CCCGCAAGCACTAACAAGAGAGAAGAATAGAAGGTTTAGGGCAAGAAATAGAGCAAG 28 >AC06g022250.1 (joined) Length=432 Score = 121 bits (65), Expect = 5e-27 Identities = 190/250 (76%), Gaps = 9/250 (4%) Strand=Plus/Minus Query 65 TAATCCCCAAAACGTTGGCTTTGATGGCGGTGCAGAGGCAAACTGCAACATCGAGATCGG 124 ||||||||||||| || ||||||||| ||||||| || ||||| ||| | || ||||| | Sbjct 349 TAATCCCCAAAACATTAGCTTTGATGACGGTGCAAAGACAAACAGCAGCTTCAAGATCAG 290 Query 125 CAAGTCCTTCAAGTAGTGAGCAGCACGGTGTTTTTGACGGAGATCCAATAACGGCACCGA 184 ||||||| ||||| | | |||||| || || ||| ||| ||| | || ||| | Sbjct 289 CAAGTCCCTCAAGCAACGTGCAGCATGGAGTGATTGGAGGATTTCCCACCACTAAACCAA 230 Query 185 TTAATCCACCGAGCAAATTAGCACAAACTCCCAACTTTATGGTGTCTCTTGGGCAGGTTG 244 ||||| || | ||||| ||||||||| || | ||||| ||| ||||| |||||||| Sbjct 229 CCAATCCGCCAATCAAATCAGCACAAACCCCTAGCTTTAGGGTATCTCTAGGGCAGGT-- 172 Query 245 TCTTTTCTTTAGGCACATGTGGAGGAGGTGGGCAAGCTGGCTTTGGCTTTGGCTTTGGCT 304 || || | ||||| |||||| |||||||| |||||||||| |||||||||||| Sbjct 171 -CTGTT-TG--GGCACCAATGGAGGCGGTGGGCA---TGGCTTTGGCATTGGCTTTGGCT 119 Query 305 TTGGCTTCGG 314 |||| || || Sbjct 118 TTGGTTTTGG 109 >AC06g019400.1 (joined) Length=426 Score = 102 bits (55), Expect = 2e-21 Identities = 257/352 (73%), Gaps = 23/352 (7%) Strand=Plus/Minus Query 39 GCTGAGAGAAAGTGGTACGTTTAAATTAATCCCCAAAACGTTGGCTTTGATGGCGGTGCA 98 ||| || |||||||| || || | ||||| |||||||| |||||||| ||||| ||||| Sbjct 372 GCTAAGGGAAAGTGGAACATTAAGGTTAATACCCAAAACATTGGCTTTAATGGCTGTGCA 313 Query 99 GAGGCAAACTGCAACATCGAGATCGGCAAGTCCTTCAAGTAGTGAGCAGCACGGTGTTTT 158 || ||||| ||| | || || || ||||| |||| || || | |||||| || ||| Sbjct 312 TAGACAAACGGCAGCTTCAAGGTCAGCAAGACCTTGAATCAGAGTGCAGCA--TTG-TTT 256 Query 159 TGA---CGGAGATCCAATAACGGCACCGATTAATCCACCGAGCAAATTAGCACAAACTCC 215 ||| ||| | ||| || | | |||| | | || |||||||| || || || || || Sbjct 255 TGACGGCGGGGTTCCGATGATGACACCCACCACACCTCCGAGCAAGTTGGCGCACACACC 196 Query 216 CAACTTTATGGTGTCTCTTGGGCAGGTTGTCTTTTCTTTAGGCACATG-T--GGAGGAGG 272 ||| || | ||| || | ||||| ||| || || |||||| | ||| | || ||||| Sbjct 195 CAATTTCAGGGTATCAGTAGGGCAAGTT-TC-CTT-TTTAGGAATATGATGAGGTGGAGG 139 Query 273 TGG----GCAA---GC-T-GGCTTTGGCTTTGGCTTTGGCTTTGGCTTCGGACAATCCCC 323 || |||| || | ||||||||||| ||||| ||||||||||| || || | Sbjct 138 AGGACAAGCAACGGGCTTCGGCTTTGGCTTCGGCTTCGGCTTTGGCTTTGGGCAGGTGTC 79 Query 324 GCAGGCACTGACCAGAGTGAAGAAAATAAGGTTTAGAGCCA-GAAAGAGAGC 374 ||| ||||| || |||| ||||||| |||||||||||| | |||| ||||| Sbjct 78 GCAAGCACTTACAAGAGAAAAGAAAAGAAGGTTTAGAGCAAAGAAA-AGAGC 28 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13681665126 Database: Asclepias_curassavica_v1.0_CDs.fa Posted date: Apr 9, 2024 2:34 PM Number of letters in database: 33,043,242 Number of sequences in database: 29,120 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5