BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Asclepias_curassavica_v1.0_CDs.fa
           29,120 sequences; 33,043,242 total letters



Query= 4

Length=2947
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

scaffold096g005020.1(joined)                                          259     6e-68
scaffold058g005020.1(joined)                                          259     6e-68
AC09g007040.1(joined)                                                 182     1e-44


>scaffold096g005020.1 (joined)
Length=630

 Score = 259 bits (140),  Expect = 6e-68
 Identities = 140/140 (100%), Gaps = 0/140 (0%)
 Strand=Plus/Minus

Query  2808  ACCTTGTGTCAGGACCGACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCG  2867
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  507   ACCTTGTGTCAGGACCGACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCG  448

Query  2868  TAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCGGACGGAGATTGG  2927
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  447   TAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCGGACGGAGATTGG  388

Query  2928  CCCTCGAGTGCAAAGGCAGA  2947
             ||||||||||||||||||||
Sbjct  387   CCCTCGAGTGCAAAGGCAGA  368


 Score = 235 bits (127),  Expect = 1e-60
 Identities = 127/127 (100%), Gaps = 0/127 (0%)
 Strand=Plus/Minus

Query  2534  CTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCT  2593
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  630   CTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCT  571

Query  2594  GGGCACTGTCTCGGAGAGAGGCTCGGTGAAATAGACATGTCTGTGAAGATGCGGACTACC  2653
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  570   GGGCACTGTCTCGGAGAGAGGCTCGGTGAAATAGACATGTCTGTGAAGATGCGGACTACC  511

Query  2654  TGCACCT  2660
             |||||||
Sbjct  510   TGCACCT  504


>scaffold058g005020.1 (joined)
Length=630

 Score = 259 bits (140),  Expect = 6e-68
 Identities = 140/140 (100%), Gaps = 0/140 (0%)
 Strand=Plus/Minus

Query  2808  ACCTTGTGTCAGGACCGACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCG  2867
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  507   ACCTTGTGTCAGGACCGACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCG  448

Query  2868  TAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCGGACGGAGATTGG  2927
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  447   TAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCGGACGGAGATTGG  388

Query  2928  CCCTCGAGTGCAAAGGCAGA  2947
             ||||||||||||||||||||
Sbjct  387   CCCTCGAGTGCAAAGGCAGA  368


 Score = 235 bits (127),  Expect = 1e-60
 Identities = 127/127 (100%), Gaps = 0/127 (0%)
 Strand=Plus/Minus

Query  2534  CTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCT  2593
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  630   CTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCT  571

Query  2594  GGGCACTGTCTCGGAGAGAGGCTCGGTGAAATAGACATGTCTGTGAAGATGCGGACTACC  2653
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  570   GGGCACTGTCTCGGAGAGAGGCTCGGTGAAATAGACATGTCTGTGAAGATGCGGACTACC  511

Query  2654  TGCACCT  2660
             |||||||
Sbjct  510   TGCACCT  504


>AC09g007040.1 (joined)
Length=1056

 Score = 182 bits (98),  Expect = 1e-44
 Identities = 98/98 (100%), Gaps = 0/98 (0%)
 Strand=Plus/Minus

Query  2548  TTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCTGGGCACTGTCTCGG  2607
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  169   TTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCTGGGCACTGTCTCGG  110

Query  2608  AGAGAGGCTCGGTGAAATAGACATGTCTGTGAAGATGC  2645
             ||||||||||||||||||||||||||||||||||||||
Sbjct  109   AGAGAGGCTCGGTGAAATAGACATGTCTGTGAAGATGC  72



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 94307762362


  Database: Asclepias_curassavica_v1.0_CDs.fa
    Posted date:  Apr 9, 2024  2:34 PM
  Number of letters in database: 33,043,242
  Number of sequences in database:  29,120



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5