BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Asclepias_curassavica_genome_v1.0.fasta 213 sequences; 206,076,041 total letters Query= Untitled_sequence Length=822 Score E Sequences producing significant alignments: (Bits) Value HiC_scaffold_2 1519 0.0 HiC_scaffold_9 121 6e-26 >HiC_scaffold_2 Length=15463102 Score = 1519 bits (822), Expect = 0.0 Identities = 822/822 (100%), Gaps = 0/822 (0%) Strand=Plus/Minus Query 1 ATGATAGAAATGACATTTTCACAGTTTCCTTCCTGGAAAATGATTACAGATGAAGAACTC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8474802 ATGATAGAAATGACATTTTCACAGTTTCCTTCCTGGAAAATGATTACAGATGAAGAACTC 8474743 Query 61 TTCCATTACAGCCTCATCCTTTTCTTTCTAATCTCACCACCAACAGCAGTTGCCCTTGGC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8474742 TTCCATTACAGCCTCATCCTTTTCTTTCTAATCTCACCACCAACAGCAGTTGCCCTTGGC 8474683 Query 121 TATGTCACAGCCCCTTATGGCAAGCACAGGCGTTCAGGCTGGGGAGTCGGCATCCCCGCA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8474682 TATGTCACAGCCCCTTATGGCAAGCACAGGCGTTCAGGCTGGGGAGTCGGCATCCCCGCA 8474623 Query 181 CCTGTGGCTTGGTTCCTGATGGAGAGTCCAACACTCTGGCTCTCCGCCCTCCTCTTCCCT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8474622 CCTGTGGCTTGGTTCCTGATGGAGAGTCCAACACTCTGGCTCTCCGCCCTCCTCTTCCCT 8474563 Query 241 TATGGTCAAAACAGGAGCAACCCGAAAGCTCTGGTCTTGGGATCACTGTACATCATCCAC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8474562 TATGGTCAAAACAGGAGCAACCCGAAAGCTCTGGTCTTGGGATCACTGTACATCATCCAC 8474503 Query 301 TATTTCCACCGCACTGTCCTCTACCCAATTAGACTCTATTTAAGGAGCTCACCCCGGAAA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8474502 TATTTCCACCGCACTGTCCTCTACCCAATTAGACTCTATTTAAGGAGCTCACCCCGGAAA 8474443 Query 361 ACGGCAAGTGAGTTTCCAGTGAGTACGGCATTGATGGGTTTTGGTTTCAATATCTTGAAT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8474442 ACGGCAAGTGAGTTTCCAGTGAGTACGGCATTGATGGGTTTTGGTTTCAATATCTTGAAT 8474383 Query 421 GCCTATTTGCAGATGAGGTGGGTGACACACTATGCTGTGTACGAAGATAGCAAGTGGTTC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8474382 GCCTATTTGCAGATGAGGTGGGTGACACACTATGCTGTGTACGAAGATAGCAAGTGGTTC 8474323 Query 481 TGGTGGCGGTTCTCTACCGGACTTGCCATTTTCGTGGCGGGCATGGCAATGAACGTAAGT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8474322 TGGTGGCGGTTCTCTACCGGACTTGCCATTTTCGTGGCGGGCATGGCAATGAACGTAAGT 8474263 Query 541 TCAGACTATGCGTTGTTGGAGCTGAAGAGGAAGGGTGGTGGGGGATACAAAATTCCCAGA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8474262 TCAGACTATGCGTTGTTGGAGCTGAAGAGGAAGGGTGGTGGGGGATACAAAATTCCCAGA 8474203 Query 601 GGTGGGTTTTTCGAGTTGGTGAGTTGCCCAAATTATTTGGGAGAAGTATTGGAGTGGTTT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8474202 GGTGGGTTTTTCGAGTTGGTGAGTTGCCCAAATTATTTGGGAGAAGTATTGGAGTGGTTT 8474143 Query 661 GGGTGGAGTTTGGTGAACTGGTCGTGGTCTGCTTTTGGCTTTTTCTTGTTCACTTGTTCT 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8474142 GGGTGGAGTTTGGTGAACTGGTCGTGGTCTGCTTTTGGCTTTTTCTTGTTCACTTGTTCT 8474083 Query 721 AATTTGATCCCTAGGGGTGTCTCAAATCACAAATGGTACCTTCAAAAGTTTGCAGAGGAC 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8474082 AATTTGATCCCTAGGGGTGTCTCAAATCACAAATGGTACCTTCAAAAGTTTGCAGAGGAC 8474023 Query 781 TATCCTAAGAACAGAAAAGCTGTTATTCCATTTATTTACTGA 822 |||||||||||||||||||||||||||||||||||||||||| Sbjct 8474022 TATCCTAAGAACAGAAAAGCTGTTATTCCATTTATTTACTGA 8473981 >HiC_scaffold_9 Length=17440605 Score = 121 bits (65), Expect = 6e-26 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 584 GATACAAAATTCCCAGAGGTGGGTTTTTCGAGTTGGTGAGTTGCCCAAATTATTTGGGAG 643 |||||||||| || | ||| || | || || ||||||||||| ||||||||||| || | Sbjct 16653644 GATACAAAATACCAAAAGGGGGAATGTTTGAATTGGTGAGTTGTCCAAATTATTTTGGGG 16653703 Query 644 AAGTATTGGAGTGGTTTGGGTGGAGTTTGGTGAACTGGTCG-TGGTCTGCTTTTGGCTTT 702 || || |||| | || || ||| |||||| || |||| ||| | ||||| ||| Sbjct 16653704 AAATAATGGAATTTTTCGGTTGGGCATTGGTG-ACGTGTCGTTGGGCGCCTTTTATATTT 16653762 Query 703 TTCTTGTTCACTTGTTCTAATTTGATCCCTAGGGGTGTCTCAAATCACAAATGGTACCTT 762 || || ||||||| || |||||||||||| | | || || ||||||||||||| | Sbjct 16653763 TTTTTAAACACTTGTAGTATTTTGATCCCTAGAGCTTTCGCACATCACAAATGGTATTTG 16653822 Query 763 CAAAAGTTTGCAGAGGACTATCCTAAGAACAGAAAAGCTGTTATTCCATTT 813 | ||||||| ||| | |||||||| || ||||||||||||||||||||| Sbjct 16653823 GATAAGTTTGGAGAAAAATATCCTAAAAATAGAAAAGCTGTTATTCCATTT 16653873 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 163825880550 Database: Asclepias_curassavica_genome_v1.0.fasta Posted date: Jun 11, 2021 2:01 PM Number of letters in database: 206,076,041 Number of sequences in database: 213 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5