BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Asclepias_curassavica_genome_v1.0.fasta 213 sequences; 206,076,041 total letters Query= HiC_scaffold_13:9179101-9180800 Length=1700 Score E Sequences producing significant alignments: (Bits) Value HiC_scaffold_13 3140 0.0 HiC_scaffold_1 86.1 4e-15 >HiC_scaffold_13 Length=18851256 Score = 3140 bits (1700), Expect = 0.0 Identities = 1700/1700 (100%), Gaps = 0/1700 (0%) Strand=Plus/Plus Query 1 AATTGAATAAAATTTAAAGACAAACACGTAAATACACAAAAACTGAAGGACTAAGTAGGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179101 AATTGAATAAAATTTAAAGACAAACACGTAAATACACAAAAACTGAAGGACTAAGTAGGT 9179160 Query 61 TAGTTTCATAGAAAGTAAATACAGAGCAGACAAGAGTCAGTAATTGATTTCAGTTCAATT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179161 TAGTTTCATAGAAAGTAAATACAGAGCAGACAAGAGTCAGTAATTGATTTCAGTTCAATT 9179220 Query 121 TGCACACAAGCATTAACGAAGCTGATGTGACTCAACTGCAAGAGTTAAATGCCATTTGAT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179221 TGCACACAAGCATTAACGAAGCTGATGTGACTCAACTGCAAGAGTTAAATGCCATTTGAT 9179280 Query 181 GGTGGTTGAAAGTTTAATTAATTTCAAGAACTCGTAATAATTACTCCATTGCATATAAGA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179281 GGTGGTTGAAAGTTTAATTAATTTCAAGAACTCGTAATAATTACTCCATTGCATATAAGA 9179340 Query 241 CATCCTAGGATTATTAAATTATTTCACTAATTTATTTATGATTCTAACACTTTATACTTA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179341 CATCCTAGGATTATTAAATTATTTCACTAATTTATTTATGATTCTAACACTTTATACTTA 9179400 Query 301 TGGTTGAAAAGTGCTTCATTTATAATTACTTACATATGCTAAAAAACAAATTGTTTGTTT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179401 TGGTTGAAAAGTGCTTCATTTATAATTACTTACATATGCTAAAAAACAAATTGTTTGTTT 9179460 Query 361 TTTGTTTTTGGGTCAATCTGACATGATGGTGTGATGGTAATATGTTGAAAATCTCGAGGT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179461 TTTGTTTTTGGGTCAATCTGACATGATGGTGTGATGGTAATATGTTGAAAATCTCGAGGT 9179520 Query 421 CGAACTTTAAGACGAGTTCTTTATATATATATATGTGTGTATGTGTGTGTGTGAAGTTCT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179521 CGAACTTTAAGACGAGTTCTTTATATATATATATGTGTGTATGTGTGTGTGTGAAGTTCT 9179580 Query 481 TGAATACCATACAAAAATTTCAACTTCATCTGTCAGCCATGCAGAACTTGGCATTTTCAC 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179581 TGAATACCATACAAAAATTTCAACTTCATCTGTCAGCCATGCAGAACTTGGCATTTTCAC 9179640 Query 541 GCATCACTATCAAACCATCTGCAAGAACGCCACCTGGCTTCAACAACCCACCGAAAAAAC 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179641 GCATCACTATCAAACCATCTGCAAGAACGCCACCTGGCTTCAACAACCCACCGAAAAAAC 9179700 Query 601 ATGCTGGATTCCTCCGCCGGCACCTACTACCACCCGTCACAGCGGCGCCAGCGCCGTTAC 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179701 ATGCTGGATTCCTCCGCCGGCACCTACTACCACCCGTCACAGCGGCGCCAGCGCCGTTAC 9179760 Query 661 GATACCAAACGTGCACCAATCAAGAAGACTCAATGCCACCGGAGAAAGTTGAAGTCTTTA 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179761 GATACCAAACGTGCACCAATCAAGAAGACTCAATGCCACCGGAGAAAGTTGAAGTCTTTA 9179820 Query 721 AATCGTTGGAGAATTGGGCATCCCACCGGGTCCTACCGTTACTCAAACCCGTCGAAAAAT 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179821 AATCGTTGGAGAATTGGGCATCCCACCGGGTCCTACCGTTACTCAAACCCGTCGAAAAAT 9179880 Query 781 CCTGGCAACCCATTGATTTTCTCCCGAACCCGGCTCAAAATTCGGAGGATTTCGCCGACG 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179881 CCTGGCAACCCATTGATTTTCTCCCGAACCCGGCTCAAAATTCGGAGGATTTCGCCGACG 9179940 Query 841 AAGTCCGCCAGTTGCGTGAACGGACTTCTCAACTTCCCGATGACTACTTTGTGGTGCTCG 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179941 AAGTCCGCCAGTTGCGTGAACGGACTTCTCAACTTCCCGATGACTACTTTGTGGTGCTCG 9180000 Query 901 TCGGTGACATGATCACCGAAGAAGCTCTGCCTACTTACCAGAGCATGTTGAACAGATTCG 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180001 TCGGTGACATGATCACCGAAGAAGCTCTGCCTACTTACCAGAGCATGTTGAACAGATTCG 9180060 Query 961 ACGGCATTCGTGACGAAACCGGTGCTAGTCCTTCCCCTTGGGCTTCTTGGATTCGTTCTT 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180061 ACGGCATTCGTGACGAAACCGGTGCTAGTCCTTCCCCTTGGGCTTCTTGGATTCGTTCTT 9180120 Query 1021 GGACTGCCGAAGAAAATAGACATGGCGATTTACTTCGTACTTATCTCTATCTTTCCGGTA 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180121 GGACTGCCGAAGAAAATAGACATGGCGATTTACTTCGTACTTATCTCTATCTTTCCGGTA 9180180 Query 1081 GAGTTGACATGCAGATGATTGACCGGACAATCCAATTCTTGATTAGCTCTGGGATGGTAA 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180181 GAGTTGACATGCAGATGATTGACCGGACAATCCAATTCTTGATTAGCTCTGGGATGGTAA 9180240 Query 1141 CGTTACATACCCCATTTGATCAATTTTCATTTGAACAAAATAATATTTGAGTAATTATTA 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180241 CGTTACATACCCCATTTGATCAATTTTCATTTGAACAAAATAATATTTGAGTAATTATTA 9180300 Query 1201 TTATTTAATTTGTTTGTGATATTAATTAATTAGGACACTGGAATAGCGAAAAATCCATAT 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180301 TTATTTAATTTGTTTGTGATATTAATTAATTAGGACACTGGAATAGCGAAAAATCCATAT 9180360 Query 1261 TTAGGATTTGTGTACACATCATTTCAAGAGCGAGCCACATTCGTGTCACATGGAAACACG 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180361 TTAGGATTTGTGTACACATCATTTCAAGAGCGAGCCACATTCGTGTCACATGGAAACACG 9180420 Query 1321 GCTCGGCTAGCCAAGGAAGGCGGGGATCCAGTGCTTGCGAGGATATGCGGTACGATTGCA 1380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180421 GCTCGGCTAGCCAAGGAAGGCGGGGATCCAGTGCTTGCGAGGATATGCGGTACGATTGCA 9180480 Query 1381 GCCGACGAGAAGCGTCACGAGAACGCTTACTCTATGGTATTTGAAAAATTACTGGAAGTA 1440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180481 GCCGACGAGAAGCGTCACGAGAACGCTTACTCTATGGTATTTGAAAAATTACTGGAAGTA 9180540 Query 1441 GATCCGAATGGTGCCATGCTGGCAATAGGTGATATGATGAGAAAGAAAATCAAAATGCCA 1500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180541 GATCCGAATGGTGCCATGCTGGCAATAGGTGATATGATGAGAAAGAAAATCAAAATGCCA 9180600 Query 1501 GCTCATCTCATGTACGACGGACAGGATCCTAATTTGTTCGAGCACTTCGCCGCCGTCACT 1560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180601 GCTCATCTCATGTACGACGGACAGGATCCTAATTTGTTCGAGCACTTCGCCGCCGTCACT 9180660 Query 1561 CAACGTCTCGGAGTTTACACCGCCGGCGACTATGCTGACATCCTTGAGTTCTTGATTGGG 1620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180661 CAACGTCTCGGAGTTTACACCGCCGGCGACTATGCTGACATCCTTGAGTTCTTGATTGGG 9180720 Query 1621 CGGTGGAATTTGGAAAAGATTCAAGGCTTGACGGCTGAAGCTAATTCTGCACAGGACTTT 1680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180721 CGGTGGAATTTGGAAAAGATTCAAGGCTTGACGGCTGAAGCTAATTCTGCACAGGACTTT 9180780 Query 1681 GTTTGTGGGCTGCCACCTAG 1700 |||||||||||||||||||| Sbjct 9180781 GTTTGTGGGCTGCCACCTAG 9180800 Score = 477 bits (258), Expect = 6e-133 Identities = 777/1028 (76%), Gaps = 33/1028 (3%) Strand=Plus/Minus Query 694 TGCCACCGGAGAAAGTTGAAGTCTTTAAATCGTTGGAGAATTGGGCATCCCACCGGGTCC 753 |||||||||| |||||| || ||||||| || | || ||||||| |||| |||| Sbjct 9182332 TGCCACCGGAAAAAGTTCAAATCTTTAAGTCACTAGAATCTTGGGCAACCCAAAATGTCC 9182273 Query 754 TACCGTTACTCAAACCCGTCGAAAAATCCTGGCAACCCATTGATTTTCTCCCGAACCCGG 813 | || | ||||||||||| || ||||| |||||||||| || || ||||||||||||| Sbjct 9182272 TTCCCCTTCTCAAACCCGTTGAGAAATCATGGCAACCCACCGAATTCCTCCCGAACCCGG 9182213 Query 814 CTCAAAATTCGGAGGATTTCGCCGACGAAGT-C-CGCCAGTTGCGTGAACGGACTTCTCA 871 |||| |||| || |||||| |||| ||||| | |||| | ||| | || || || | Sbjct 9182212 CTCAGAATTTCGATGATTTCACCGAAGAAGTTCGCGCC--CTCCGTCACCGTACCTCCGA 9182155 Query 872 ACTTCCCGATGACTACTTTGTGGTGCTCGTCGGTGACATGATCACCGAAGAAGCTCTGCC 931 ||||||||||| ||||| || || || |||||||||||||| || |||||||| |||| Sbjct 9182154 TCTTCCCGATGAGTACTTGGTCGTTCTTGTCGGTGACATGATTACGGAAGAAGCATTGCC 9182095 Query 932 TACTTACCAGAGCATGTTGAACAGATTCGACGGCATTCGTGACGAAACCGGTGCTAGTCC 991 ||||| || || ||| | |||||| | |||||| || || || || || ||| || | Sbjct 9182094 AACTTATCAAAGTATGATTAACAGACTTGACGGCGTTAAGGATGAGACGGGAGCTTGTAC 9182035 Query 992 TTCCCCTTGGGCTTCTTGGATTCGTTCTTGGACTGCCGAAGAAAATAGACATGGCGATTT 1051 ||||||||||||| ||||| || ||||||| || |||||||| | || |||||||| Sbjct 9182034 TTCCCCTTGGGCTATTTGGACACGAGCTTGGACGGCGGAAGAAAACCGTCACGGCGATTT 9181975 Query 1052 ACTTCGTACTTATCTCTATCTTTCCGGTAGAGTTGACATG-CAGATGATTGACCGGACAA 1110 ||| |||||||| || |||||||| |||||||||||| || ||||||||| || | Sbjct 9181974 ACTCAAGACTTATCTTTACCTTTCCGGCAGAGTTGACATGACA-ATGATTGACAAAACTA 9181916 Query 1111 TCCAATTCTTGATTAGCTCTGGGATGGTAACGTTAC---A-TAC-C---CCATTT-GA-- 1159 |||||| || |||| || || |||||| |||| | | | | | | |||| || Sbjct 9181915 TCCAATATTTACTTAGTTCCGGCATGGTA-CGTTTCTTAATTTCGCTTTCAATTTCGAGC 9181857 Query 1160 TCAATTT--TCATTTGAACAAAATAATATTTGA-GTAATTATTATTATTTAATTTGT-TT 1215 |||||| ||| || |||||| || |||| | || || || ||| ||| | | Sbjct 9181856 CCAATTTGGTCAATT---CAAAAT-TTA-TTGACTTTTTTTTTTTTTTTTGTTTTATCCT 9181802 Query 1216 GTGATATTAATTAATTA-GGACACTGGAATAGCGAAAAATCCATATTTAGGATTTGTGTA 1274 | | |||||||||| | | ||||| | | | |||||| ||||| ||||||||||| Sbjct 9181801 TT-TTGGTAATTAATTAAGAATACTGGTACAAATAGAAATCCCTATTTTGGATTTGTGTA 9181743 Query 1275 CACATCATTTCAAGAGCGAGCCACATTCGTGTCACATGGAAACACGGCTCGGCTAGCCAA 1334 ||| ||||| ||||||||||||||||| ||||||||||| || ||||||||||| ||||| Sbjct 9181742 CACGTCATTCCAAGAGCGAGCCACATTTGTGTCACATGGTAATACGGCTCGGCTCGCCAA 9181683 Query 1335 GGAAGGCGGGGATCCAGTGCTTGCGAGGATATGCGGTACGATTGCAGCCGACGAGAAGCG 1394 ||| | |||||||| ||||| || | |||||| ||| | |||||| ||||||||||||| Sbjct 9181682 GGAGAGAGGGGATCCTGTGCTAGCCAAGATATGTGGTTCAATTGCATCCGACGAGAAGCG 9181623 Query 1395 TCACGAGAACGCTTACTCTATGGTATT-T-GAAAAATTACTGGAAGTAGATCCGAATGGT 1452 ||||||| |||||||| | | || | || |||||| | ||||| ||||||| || Sbjct 9181622 CCACGAGAGTGCTTACTCGA-GA-ATCGTCGAGAAATTAGTCGAAGTGGATCCGAGCGGA 9181565 Query 1453 GCCATGCTGGCAATAGGTGATATGATGAGAAAGAAAATCAAAATGCCAGCTCATCTCATG 1512 |||||| | || |||||||| |||||||||| |||||| | |||||| |||||||| ||| Sbjct 9181564 GCCATGTTAGCCATAGGTGAAATGATGAGAATGAAAATTACAATGCCGGCTCATCTAATG 9181505 Query 1513 TACGACGGACAGGATCCTAATTTGTTCGAGCACTTCGCCGCCGTCACTCAACGTCTCGGA 1572 |||||||| || ||||| ||| |||||| || ||| | || || | ||||| ||||| Sbjct 9181504 TACGACGGCCAAGATCCGAATCTGTTCGCTCATTTCTCGGCTGTAGCCCAACGACTCGGG 9181445 Query 1573 GTTTACACCGCCGGCGACTATGCTGACATCCTTGAGTTCTTGATTGGGCGGTGGAATTTG 1632 ||||| || ||||| || ||||| ||||| ||||| || || ||| ||||||| || Sbjct 9181444 GTTTATACTGCCGGAGATTATGCAGACATTCTTGAATTTTTAATTCAACGGTGGAGATTA 9181385 Query 1633 GAAAAGATTCAAGGCTTGACGGCTGAAGCTAATTCTGCACAGGACTTTGTTTGTGGGCTG 1692 || ||| | | || ||||||| ||| || | |||||| || || || ||||| || Sbjct 9181384 GAGAAGCTCGAGGGTTTGACGGATGATGCGAGACGTGCACAAGAGTTCGTGTGTGGACTA 9181325 Query 1693 CCACCTAG 1700 | ||||| Sbjct 9181324 GCTCCTAG 9181317 >HiC_scaffold_1 Length=19001867 Score = 86.1 bits (46), Expect = 4e-15 Identities = 193/266 (73%), Gaps = 2/266 (1%) Strand=Plus/Minus Query 874 TTCCCGATGACTACTTTGTGGTGCTCGTCGGTGACATGATCACCGAAGAAGCTCTGCCTA 933 |||| |||||||| ||||| ||| | || || || ||||| || || ||||| || || | Sbjct 8587134 TTCCTGATGACTATTTTGTTGTGTTAGTTGGAGATATGATTACAGAGGAAGCACTTCCAA 8587075 Query 934 CTTACCAGAGCATGTTGAACAGATTCGACGGCATTCGTGACGAAACCGGTGCTAGTCCT- 992 ||||||||| ||| | || | | || || |||| ||||| || ||||| || ||| Sbjct 8587074 CTTACCAGACAATGCTTAATACCCTTGATGGAGTTCGAGACGAGACAGGTGCCAG-CCTA 8587016 Query 993 TCCCCTTGGGCTTCTTGGATTCGTTCTTGGACTGCCGAAGAAAATAGACATGGCGATTTA 1052 | |||||||| ||||| | | | |||||||| || || ||||| ||||| || | Sbjct 8587015 ACTTCTTGGGCTATTTGGACTAGGGCATGGACTGCAGAGGAGAATAGGCATGGTGACCTC 8586956 Query 1053 CTTCGTACTTATCTCTATCTTTCCGGTAGAGTTGACATGCAGATGATTGACCGGACAATC 1112 ||| | ||||| |||||||| ||||||||||| ||| | |||||| ||| || Sbjct 8586955 CTTAACAAATATCTTTATCTTTCTGGTAGAGTTGATATGAGGCAGATTGAAAAGACGATT 8586896 Query 1113 CAATTCTTGATTAGCTCTGGGATGGT 1138 || | | | ||| ||||||| ||||| Sbjct 8586895 CAGTACCTTATTGGCTCTGGCATGGT 8586870 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 344549168744 Database: Asclepias_curassavica_genome_v1.0.fasta Posted date: Jun 11, 2021 2:01 PM Number of letters in database: 206,076,041 Number of sequences in database: 213 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5