BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Asclepias_syriaca_v0.3_chromosomes.fa 673 sequences; 317,062,912 total letters Query= Untitled_sequence Length=1510 Score E Sequences producing significant alignments: (Bits) Value AS0.3ch06 749 0.0 >AS0.3ch06 Length=25294809 Score = 749 bits (405), Expect = 0.0 Identities = 487/526 (93%), Gaps = 8/526 (2%) Strand=Plus/Plus Query 167 TGTGTGGATGGGCTAGATTTTGTGTAGCTTAACATCAATTGT--CATTTTATGTTTTGAA 224 || ||||||||||||||||| |||||||||| |||||||||| ||||||||| |||| | Sbjct 10836403 TGCGTGGATGGGCTAGATTTCGTGTAGCTTACCATCAATTGTGTCATTTTATG-TTTG-A 10836460 Query 225 AACTTTTCAGATGAAAGGTATTGCGACAGAGAACTTTCAGCGGATATGTGAAGCCTATGA 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10836461 AACTTTTCAGATGAAAGGTATTGCGACAGAGAACTTTCAGCGGATATGTGAAGCCTATGA 10836520 Query 285 AATTTTAACTGATAAGAAGAAAAGGCAGATATATGATCTGTATGGCATGGAAGGGTTAAC 344 |||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 10836521 AATTTTAATTGATGAGAAGAAAAGGCAGATATATGATCTGTATGGTATGGAAGGGTTAAC 10836580 Query 345 TTCTGGTTTAG-AACTTGGGCCAAAACTCGATAAGGTTGCTGAGATTAAAGAAGAGCTTG 403 ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 10836581 TTCTGGTTTAGAAACTTGGGCCAAAACTTGATAAGGTTGCTGAGATTAAAGAAGAGCTTG 10836640 Query 404 AGAGACTAAGACGGAAAAAGGAAGAAGAAAAGATCTTTGCTCATTTCCGGCCTTCTGGTT 463 |||||||| |||| | ||||||||| || ||||||| ||||||||||| ||||||||||| Sbjct 10836641 AGAGACTACGACGAAGAAAGGAAGAGGAGAAGATCTCTGCTCATTTCCAGCCTTCTGGTT 10836700 Query 464 CAATTCTTGCAAATCTGTCCTTCCCACAGTTTCTAAGGGGTGGTGGCATTATGAAAGGGT 523 ||||| |||||||||||||||| |||||||||| |||||||||||| ||||||||||||| Sbjct 10836701 CAATTATTGCAAATCTGTCCTTTCCACAGTTTCAAAGGGGTGGTGGAATTATGAAAGGGT 10836760 Query 524 AACTTAGTTCTCCTTTCTCTCTCCCACATTTAATGTTGGTCCATTTGATGGGCAAATTTG 583 |||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||| Sbjct 10836761 AACTTAGTTCTCCTTTCTCTCTCCTACATTTAATGTTGGTACATTTGATGGGCTAATTTG 10836820 Query 584 TGTGTTTTTTAAAGATTTAAACTATTAGTTTGCGGAAATTAAGATCTAAGACCATGGATC 643 ||||||||| |||||||||||| ||||||||| ||||||||||||| |||||| ||| || Sbjct 10836821 TGTGTTTTTCAAAGATTTAAACAATTAGTTTGTGGAAATTAAGATCCAAGACCGTGGGTC 10836880 Query 644 TTTTTTGGATGATTTCATTACTCTGTGTAAAATGCATCTTGTTCTA 689 |||| | ||||||||||||||| |||| ||||||||||| |||| Sbjct 10836881 TTTTC-GCATGATTTCATTACTC--TGTAGAATGCATCTTGCTCTA 10836923 Score = 409 bits (221), Expect = 3e-112 Identities = 390/465 (84%), Gaps = 37/465 (8%) Strand=Plus/Plus Query 1056 TTTCTTCTGGATAGGTTCGGGAGGAAAGAGCAGCAGCAGAGAAAGCTCAAAAGTTGTTAG 1115 ||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 10840304 TTTCTTCTGCATAGGTTCGGGAGGAAAGAGCAGCAGCTGAGAAAGCCCAAAAGTTGTTAC 10840363 Query 1116 AAAATGTAGCCAATAGGAAAAGAAGCAAACAGCTAGAAACTGGCGGCTTAGTAATCACAA 1175 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10840364 AAAATGTAGCCAATAGGAAAAGAAGCAAACAGCTAGAAACTGGCGGCTTAGTAATCACAA 10840423 Query 1176 AAGCAATTTATGGAAGCGTTAAAGCTTTGAGAAACAA-A-AATC-AATCTGAAGAAACAA 1232 |||||||||||||||| ||| ||||||||| ||| || | || | ||||||||||||||| Sbjct 10840424 AAGCAATTTATGGAAGTGTTCAAGCTTTGAAAAAAAACAGAAACGAATCTGAAGAAACAA 10840483 Query 1233 AAGATGGCATTGCTTCACAAATCGCTGATGTTACTCTTCCTCTCAATTTTCTGGTTACTG 1292 |||||| ||||||||||||| |||| ||||| ||||||||||| |||||||||||||||| Sbjct 10840484 AAGATGACATTGCTTCACAAGTCGCCGATGTGACTCTTCCTCTAAATTTTCTGGTTACTG 10840543 Query 1293 AGTCTGGGCAACTTAAGGTTTGTTTTCCCTG----TAT---A----A-TGA-TATTACGA 1339 | ||||||||||||||||| |||| ||| | ||| | | ||| |||| || Sbjct 10840544 AATCTGGGCAACTTAAGGTCTGTTCTCCTAGGAGATATTTGACTTTAATGATTATTGGGA 10840603 Query 1340 ATATTCACAACTGGTTTAACCTAATTGAGC-AATGCTGGTTCAAAAATTACATGAT-CTG 1397 ||||||||||| ||||||||||||| ||| ||| || | | | | | ||| || Sbjct 10840604 ATATTCACAACCAGTTTAACCTAATTCAGCGAATCCTTTTGCTCATGTGA--TGAAACT- 10840660 Query 1398 CTGTGA-ATCCTTATGCTTGAAACTCTTGACATTCCTGCAGCTACACGAAGGGATAAAGA 1456 || ||| || |||| || | || | |||||||||||||||||||||||||||| Sbjct 10840661 CT-TGACATGTATATG-TT----C-CT-G---TTCCTGCAGCTACACGAAGGGATAAAGA 10840709 Query 1457 AATCGGGAATCATGGGCTTCTTCGATCCT-C---AGGAGAGAAAA 1497 |||||||||||||||||||||||||||| | ||||||||||| Sbjct 10840710 GATCGGGAATCATGGGCTTCTTCGATCCTTCTCCAGGAGAGAAAA 10840754 Score = 313 bits (169), Expect = 2e-83 Identities = 190/200 (95%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 708 AATTTCTGTTCATGGATGCTAACTGAATGCAGAATGGCTATGGCAAGTCAACTTCAGTCT 767 |||||||||||||||||| ||||||||||||||||||||||||||||| || |||| ||| Sbjct 10837086 AATTTCTGTTCATGGATGTTAACTGAATGCAGAATGGCTATGGCAAGTGAAGTTCACTCT 10837145 Query 768 CAAATATCGAAACAAAATGTTATTGCCATTGGTGGGAACATGGCAGTTCATGGAGCTGCT 827 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 10837146 CAAATATCGAAACAAAATGTT-TTGCCATTGGTGGGAACATGGCAGTTCATGGAGCTGCT 10837204 Query 828 GGTAGTGGTGCAGCATCTTTTGCCTTTAGACATCAAATATCTCCAGTATCTTCTATGGAA 887 ||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 10837205 GGTGGTGGCGCAGCATCTGTTGTCTTTAGACATCAAATATCTCCAGTATCTTCTATGGAA 10837264 Query 888 TTCATGGCTTCTACGGGTTT 907 ||||||||||||| |||||| Sbjct 10837265 TTCATGGCTTCTATGGGTTT 10837284 Score = 250 bits (135), Expect = 2e-64 Identities = 157/167 (94%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 7 CTGAAAATTGAAGAGCAATGAAAGAAGC---AGAAGAACCTTCCAACAGAGAGCTTTATG 63 ||||||||||||||| |||||||||||| ||||||||||||||| ||||| ||||||| Sbjct 10835401 CTGAAAATTGAAGAGAAATGAAAGAAGCAGAAGAAGAACCTTCCAAAAGAGACCTTTATG 10835460 Query 64 CATTACTTCACATTTCTCCGGAAGCCTCTGATGAAGAAATTAGAAGGGCTTATCGTCAAT 123 ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 10835461 CATTACTTCACATTTCTCCGGCAGCTTCTGATGAAGAAATTAGAAGGGCTTATCGTCAAT 10835520 Query 124 GGGCACAAGTCTACCATCCTGATAAGTATCAGGCTGCTGATGT-TGT 169 |||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 10835521 GGGCGCAAGTCTACCATCCTGATAAGTATCAGGCTGCTGATGTATGT 10835567 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 469859308776 Database: Asclepias_syriaca_v0.3_chromosomes.fa Posted date: Jun 11, 2021 1:59 PM Number of letters in database: 317,062,912 Number of sequences in database: 673 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5