BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Asclepias_syriaca_v0.3_chromosomes.fa 673 sequences; 317,062,912 total letters Query= Untitled_sequence Length=1133 Score E Sequences producing significant alignments: (Bits) Value AS0.3ch06 597 4e-169 AS0.3ch04 143 3e-32 >AS0.3ch06 Length=25294809 Score = 597 bits (323), Expect = 4e-169 Identities = 392/425 (92%), Gaps = 6/425 (1%) Strand=Plus/Plus Query 473 ATGAAGGCTATGACTTGTTATTATGAAACCAGATTGG-AAATTGGAGGAAATTCATTTTT 531 ||||||||||| |||||||||||||||| |||||| |||| | ||||||| ||||||| Sbjct 23405636 ATGAAGGCTATACCTTGTTATTATGAAACTGGATTGGAAAATAGAAGGAAATGCATTTTT 23405695 Query 532 TGGTATACTTTCTCATTA--TTTCACTTGATACATTGGTTTTGCTGTTGAATTTTTTAGG 589 |||||||| |||||||| |||||||||||||||||| ||| |||||||| |||||||| Sbjct 23405696 GGGTATACTCTCTCATTATTTTTCACTTGATACATTGGGTTTTCTGTTGAAATTTTTAGG 23405755 Query 590 AAATATGGAATAGTCCATATTCAAATGATAGCTTCCCTGTCTATGCTGAAGAGATTGATG 649 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 23405756 AAATATGGAATAGTCCATATTCAAATGATAGCTTCCCTGTCTATGCTGAGGAGATTGATG 23405815 Query 650 CTGGTTTTGATAAATCTCCTTCTACAGCCATGTTGTCTGAAGTTGCTCGTATCCTAAAAG 709 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 23405816 CTGGTTTTGATAAATCTCCTTCTACAGCCATGTTGTCTGAAGTTGCTAGTATCCTAAAAG 23405875 Query 710 TTACAATTGTGGGAGGCTCAATTCCGGAAAGAAGTGGGGATAAATTGTACAATACTTGTT 769 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 23405876 TTACAATTGTGGGAGGCTCAATTCCAGAAAGAAGTGGGGATAAATTATACAATACTTGTT 23405935 Query 770 GTGTATTTGGTACTGATGGAGAGCTGAAAGCTAAGCACAGAAAGGTAGTGCATTTTACTC 829 |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| Sbjct 23405936 GTGTATTTGGTACTGATGGACAGCTGAAAGCTAAGCACAGGAAGGTAGTGCATTTTTCTC 23405995 Query 830 CACTTTTCTCT-CC--TTTTGTTGGTTGGCTTATGATATTCCTTTTGCTAAATGGATGTC 886 |||||| || | || |||||||| |||||||||||||| |||||| || || ||||||| Sbjct 23405996 CACTTTCCTATACCTATTTTGTTGTTTGGCTTATGATATCCCTTTTACTGAAGGGATGTC 23406055 Query 887 TGTTT 891 | ||| Sbjct 23406056 TATTT 23406060 Score = 244 bits (132), Expect = 7e-63 Identities = 162/175 (93%), Gaps = 8/175 (5%) Strand=Plus/Plus Query 944 GAACTTTCTGCTGAATCATGTAGCATTCTCGATAACACACTGTCAGTGTTTCTTTTCATG 1003 |||||||||||||||||||||||||||| ||||||||| | | | |||||||||| Sbjct 23406296 GAACTTTCTGCTGAATCATGTAGCATTCACGATAACAC--T-T-A----TTCTTTTCATA 23406347 Query 1004 ACAGATACACCTTTTTGATATTGACATTCCTGGTAAAATTACCTTCATGGAATCAAAGAC 1063 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 23406348 ACAGATACACCTTTTTGATATTGACATTCCTGGTAAAGTTACCTTCATGGAATCAAAGAC 23406407 Query 1064 ACTTACAGCTGGGGAAACTCCTACCATTGTGGACACAGGTAATGGTTCTTTTAAA 1118 |||||||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 23406408 ACTTACAGCTGGGGAAGCTCCTACCATTGTGGACACAGGTAATGGTTCTTCTAAA 23406462 Score = 237 bits (128), Expect = 1e-60 Identities = 165/182 (91%), Gaps = 5/182 (3%) Strand=Plus/Plus Query 140 ATATTTTTTGGTT-TGTGTAGTTTAAGATTGGGATATGTCAATTATCGGTTACTTCTGAT 198 |||||||| | || ||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 23405377 ATATTTTTGGTTTGTGTGTAGTTTAAGATTGGGTTATGTCAATTATCGGTTACCTCTGAT 23405436 Query 199 AAGGAAAGGAATATACTCCATGCAAGGACGGCAATTGAGGAGGCTGCTGAGAAGGGAGCA 258 ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 23405437 AAGGAAAGGAATATACTCCATGCGAGGACGGCAATTGAGGAGGCTGCTGGGAAGGGAGCT 23405496 Query 259 AAACTCGTAGTTCTGCCTGTAAGTA---GATTTTGTTCAATAC-TACTCTGCGTTCTGAT 314 |||||||||||| |||||||||| | |||||||||||| | |||||||| ||||||| Sbjct 23405497 AAACTCGTAGTTTTGCCTGTAAGAAGTTGATTTTGTTCAACAATTACTCTGCATTCTGAT 23405556 Query 315 TT 316 || Sbjct 23405557 TT 23405558 Score = 152 bits (82), Expect = 4e-35 Identities = 92/97 (95%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 24 ATCATCCATGGCTGTTGCCTCTTTCAAACCTGAACAAGCTAGGATTCCTTCTGTGGTTCC 83 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 23405184 ATCATCCATGGCTGTTGCCTCTTTCAAACCTGAAGAAGCTAGGATTCCTTCTGTGGTTCC 23405243 Query 84 GTTACCCACTCCTCCATTAACCAAGGCGAGTATTTAT 120 ||||||||||||| || | ||||||| |||||||||| Sbjct 23405244 GTTACCCACTCCTTCAATCACCAAGGTGAGTATTTAT 23405280 >AS0.3ch04 Length=27254818 Score = 143 bits (77), Expect = 3e-32 Identities = 181/233 (78%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 583 TTTTAGGAAATATGGAATAGTCCATATTCAAATGATAGCTTCCCTGTCTATGCTGAAGAG 642 || |||||||| |||||||| |||||||||||||| || || || | |||||||| || Sbjct 1660724 TTATAGGAAATTTGGAATAGCCCATATTCAAATGACAGTTTTCCAGAATATGCTGAGGAT 1660783 Query 643 ATTGATGCTGGTTTTGATAAATCTCCTTCTACAGCCATGTTGTCTGAAGTTGCTCGTATC 702 |||||||||||| || | |||||||| || || ||| | |||||| | |||| || Sbjct 1660784 ATTGATGCTGGTGCTGGTGCTTCTCCTTCCACTGCAATGCTTTCTGAATTATCTCGGATG 1660843 Query 703 CTAAAAGTTACAATTGTGGGAGGCTCAATTCCGGAAAGAAGTGGGGATAAATTGTACAAT 762 || ||| | || ||| | || ||||| || ||||| | ||||| |||||| | |||||| Sbjct 1660844 CTTAAAATCACTATTATTGGTGGCTCCATACCGGAGCGCAGTGGAGATAAACTATACAAT 1660903 Query 763 ACTTGTTGTGTATTTGGTACTGATGGAGAGCTGAAAGCTAAGCACAGAAAGGT 815 || ||||| || ||||||||||||||| |||| | || ||||| || ||||| Sbjct 1660904 ACATGTTGCGTCTTTGGTACTGATGGAAAGCTTATAGGCAAGCATAGGAAGGT 1660956 Score = 91.6 bits (49), Expect = 9e-17 Identities = 92/113 (81%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 991 GTTTCTTTTCATGACAGATACACCTTTTTGATATTGACATTCCTGGTAAAATTACCTTCA 1050 |||| |||| | ||||||||| || ||||| ||||||||||| || | || ||||||| Sbjct 1661076 GTTTATTTT-GTTACAGATACATCTATTTGACATTGACATTCCAGGCAGGATGACCTTCA 1661134 Query 1051 TGGAATCAAAGACACTTACAGCTGGGGAAACTCCTACCATTGTGGACACAGGT 1103 ||||| ||||| || ||||| ||||||| |||||| |||||||| |||||| Sbjct 1661135 AAGAATCGAAGACCCTCACAGCAGGGGAAAGTCCTACTATTGTGGATACAGGT 1661187 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 350333695140 Database: Asclepias_syriaca_v0.3_chromosomes.fa Posted date: Jun 11, 2021 1:59 PM Number of letters in database: 317,062,912 Number of sequences in database: 673 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5