BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Asclepias_curassavica_genome_v1.0.fasta 213 sequences; 206,076,041 total letters Query= Untitled_sequence Length=447 Score E Sequences producing significant alignments: (Bits) Value HiC_scaffold_2 785 0.0 >HiC_scaffold_2 Length=15463102 Score = 785 bits (425), Expect = 0.0 Identities = 425/425 (100%), Gaps = 0/425 (0%) Strand=Plus/Minus Query 23 AGACATTAAGGAGCAAGCTGAGAGAAAGTGGTACGTTTAAATTAATCCCCAAAACGTTGG 82 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5376917 AGACATTAAGGAGCAAGCTGAGAGAAAGTGGTACGTTTAAATTAATCCCCAAAACGTTGG 5376858 Query 83 CTTTGATGGCGGTGCAGAGGCAAACTGCAACATCGAGATCGGCAAGTCCTTCAAGTAGTG 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5376857 CTTTGATGGCGGTGCAGAGGCAAACTGCAACATCGAGATCGGCAAGTCCTTCAAGTAGTG 5376798 Query 143 AGCAGCACGGTGTTTTTGACGGAGATCCAATAACGGCACCGATTAATCCACCGAGCAAAT 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5376797 AGCAGCACGGTGTTTTTGACGGAGATCCAATAACGGCACCGATTAATCCACCGAGCAAAT 5376738 Query 203 TAGCACAAACTCCCAACTTTATGGTGTCTCTTGGGCAGGTTGTCTTTTCTTTAGGCACAT 262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5376737 TAGCACAAACTCCCAACTTTATGGTGTCTCTTGGGCAGGTTGTCTTTTCTTTAGGCACAT 5376678 Query 263 GTGGAGGAGGTGGGCAAGCTGGCTTTGGCTTTGGCTTTGGCTTTGGCTTCGGACAATCCC 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5376677 GTGGAGGAGGTGGGCAAGCTGGCTTTGGCTTTGGCTTTGGCTTTGGCTTCGGACAATCCC 5376618 Query 323 CGCAGGCACTGACCAGAGTGAAGAAAATAAGGTTTAGAGCCAGAAAGAGAGCTAGTTTGG 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5376617 CGCAGGCACTGACCAGAGTGAAGAAAATAAGGTTTAGAGCCAGAAAGAGAGCTAGTTTGG 5376558 Query 383 CCATTTCTAAAATTAACTCACTCTTCTTTAAGATACTGAGGCTTTCTCTCTTTGGGATGA 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5376557 CCATTTCTAAAATTAACTCACTCTTCTTTAAGATACTGAGGCTTTCTCTCTTTGGGATGA 5376498 Query 443 CTTAG 447 ||||| Sbjct 5376497 CTTAG 5376493 Score = 191 bits (103), Expect = 2e-47 Identities = 274/357 (77%), Gaps = 9/357 (3%) Strand=Plus/Minus Query 27 ATTAAGGAGCAAGCTGAGAGAAAGTGGTACGTTTAAATTAATCCCCAAAACGTTGGCTTT 86 |||||| |||||||| || |||||||| || || | ||||| ||||||| |||||||| Sbjct 5371342 ATTAAGAAGCAAGCTAAGGGAAAGTGGAACATTAAGGTTAATGCCCAAAAGATTGGCTTT 5371283 Query 87 GATGGCGGTGCAGAGGCAAACTGCAACATCGAGATCGGCAAGTCCTTCAAGTAGTGAGCA 146 ||||| ||||| || ||||||||| | || || || ||||| ||||||| || | ||| Sbjct 5371282 AATGGCTGTGCATAGACAAACTGCAGCTTCAAGGTCAGCAAGACCTTCAATCAGAGTGCA 5371223 Query 147 GCACGGTGTTTTTGACGGAGATCCAATAACGGCACCGATTAATCCACCGAGCAAATTAGC 206 ||| ||| || | ||| | ||| || || |||||| || || |||||||| || || Sbjct 5371222 GCATGGTTTTGACGGCGGTGTTCCGATCACAATACCGATCAAACCTCCGAGCAAGTTTGC 5371163 Query 207 ACAAACTCCCAACTTTATGGTGTCTCTTGGGCAGGTTGTCTTTTCTTTAGGCACATG-T- 264 ||| || ||||| |||| ||| || | ||||| ||| || || |||||| ||||| | Sbjct 5371162 ACACACGCCCAATTTTAGGGTATCAGTAGGGCAAGTT-TC-CTT-TTTAGGAACATGATG 5371106 Query 265 -GGAGGAGGTGGGCA-AGC--TGGCTTTGGCTTTGGCTTTGGCTTTGGCTTCGGACAATC 320 || ||||| || || || |||||| ||||| ||||||||||| ||||| || || || Sbjct 5371105 AGGTGGAGGAGGACATGGCTTTGGCTTAGGCTTCGGCTTTGGCTTCGGCTTTGGGCAGTC 5371046 Query 321 CCCGCAGGCACTGACCAGAGTGAAGAAAATAAGGTTTAGAGCCAGAAAGAGAGCTAG 377 |||||| ||||| || |||| |||||| | ||||||||| || ||||| ||||| || Sbjct 5371045 CCCGCAAGCACTAACAAGAGAGAAGAATAGAAGGTTTAGGGCAAGAAATAGAGCAAG 5370989 Score = 121 bits (65), Expect = 3e-26 Identities = 190/250 (76%), Gaps = 9/250 (4%) Strand=Plus/Minus Query 65 TAATCCCCAAAACGTTGGCTTTGATGGCGGTGCAGAGGCAAACTGCAACATCGAGATCGG 124 ||||||||||||| || ||||||||| ||||||| || ||||| ||| | || ||||| | Sbjct 2035448 TAATCCCCAAAACATTAGCTTTGATGACGGTGCAAAGACAAACAGCAGCTTCAAGATCAG 2035389 Query 125 CAAGTCCTTCAAGTAGTGAGCAGCACGGTGTTTTTGACGGAGATCCAATAACGGCACCGA 184 ||||||| ||||| | | |||||| || || ||| ||| ||| | || ||| | Sbjct 2035388 CAAGTCCCTCAAGCAACGTGCAGCATGGAGTGATTGGAGGATTTCCCACCACTAAACCAA 2035329 Query 185 TTAATCCACCGAGCAAATTAGCACAAACTCCCAACTTTATGGTGTCTCTTGGGCAGGTTG 244 ||||| || | ||||| ||||||||| || | ||||| ||| ||||| |||||||| Sbjct 2035328 CCAATCCGCCAATCAAATCAGCACAAACCCCTAGCTTTAGGGTATCTCTAGGGCAGGT-- 2035271 Query 245 TCTTTTCTTTAGGCACATGTGGAGGAGGTGGGCAAGCTGGCTTTGGCTTTGGCTTTGGCT 304 || || | ||||| |||||| |||||||| |||||||||| |||||||||||| Sbjct 2035270 -CTGTT-TG--GGCACCAATGGAGGCGGTGGGCA---TGGCTTTGGCATTGGCTTTGGCT 2035218 Query 305 TTGGCTTCGG 314 |||| || || Sbjct 2035217 TTGGTTTTGG 2035208 Score = 102 bits (55), Expect = 1e-20 Identities = 257/352 (73%), Gaps = 23/352 (7%) Strand=Plus/Minus Query 39 GCTGAGAGAAAGTGGTACGTTTAAATTAATCCCCAAAACGTTGGCTTTGATGGCGGTGCA 98 ||| || |||||||| || || | ||||| |||||||| |||||||| ||||| ||||| Sbjct 5368983 GCTAAGGGAAAGTGGAACATTAAGGTTAATACCCAAAACATTGGCTTTAATGGCTGTGCA 5368924 Query 99 GAGGCAAACTGCAACATCGAGATCGGCAAGTCCTTCAAGTAGTGAGCAGCACGGTGTTTT 158 || ||||| ||| | || || || ||||| |||| || || | |||||| || ||| Sbjct 5368923 TAGACAAACGGCAGCTTCAAGGTCAGCAAGACCTTGAATCAGAGTGCAGCA--TTG-TTT 5368867 Query 159 TGA---CGGAGATCCAATAACGGCACCGATTAATCCACCGAGCAAATTAGCACAAACTCC 215 ||| ||| | ||| || | | |||| | | || |||||||| || || || || || Sbjct 5368866 TGACGGCGGGGTTCCGATGATGACACCCACCACACCTCCGAGCAAGTTGGCGCACACACC 5368807 Query 216 CAACTTTATGGTGTCTCTTGGGCAGGTTGTCTTTTCTTTAGGCACATG-T--GGAGGAGG 272 ||| || | ||| || | ||||| ||| || || |||||| | ||| | || ||||| Sbjct 5368806 CAATTTCAGGGTATCAGTAGGGCAAGTT-TC-CTT-TTTAGGAATATGATGAGGTGGAGG 5368750 Query 273 TGG----GCAA---GC-T-GGCTTTGGCTTTGGCTTTGGCTTTGGCTTCGGACAATCCCC 323 || |||| || | ||||||||||| ||||| ||||||||||| || || | Sbjct 5368749 AGGACAAGCAACGGGCTTCGGCTTTGGCTTCGGCTTCGGCTTTGGCTTTGGGCAGGTGTC 5368690 Query 324 GCAGGCACTGACCAGAGTGAAGAAAATAAGGTTTAGAGCCA-GAAAGAGAGC 374 ||| ||||| || |||| ||||||| |||||||||||| | |||| ||||| Sbjct 5368689 GCAAGCACTTACAAGAGAAAAGAAAAGAAGGTTTAGAGCAAAGAAA-AGAGC 5368639 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86755681763 Database: Asclepias_curassavica_genome_v1.0.fasta Posted date: Jun 11, 2021 2:01 PM Number of letters in database: 206,076,041 Number of sequences in database: 213 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5