BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Asclepias_curassavica_v1.0_CDs.fa
           29,120 sequences; 33,043,242 total letters



Query= Untitled_sequence

Length=789
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

AC06g013380.1(joined)                                                 62.1    5e-09


>AC06g013380.1 (joined)
Length=822

 Score = 62.1 bits (33),  Expect = 5e-09
 Identities = 169/235 (72%), Gaps = 8/235 (3%)
 Strand=Plus/Plus

Query  559  ATACCGAGAGGAGGCTGGTTCGAGTTGGTAAGCTGTCCGAATTATTTTGGAGAGGCGATT  618
            || || ||||| || |  ||||||||||| || || || |||||||| ||||| |  |||
Sbjct  592  ATTCCCAGAGGTGGGTTTTTCGAGTTGGTGAGTTGCCCAAATTATTTGGGAGAAGT-ATT  650

Query  619  G-AGTGGTTGGGCTGGGCTGTTATGACTTGGTCTTGGGCCGGTATTGGATTTTTTCTGTA  677
            | ||||||| || |||  | |  |||  ||||| ||| | | | |||| |||||  ||| 
Sbjct  651  GGAGTGGTTTGGGTGGAGTTTGGTGAACTGGTCGTGGTCTGCTTTTGGCTTTTTCTTGTT  710

Query  678  CACGTGTTCCAATTTGTTTCC--GCG-TGCACGTGCGAGTCACAAGTGGTACATTGCCAA  734
            ||| ||||| |||||| | ||  | | ||  | | | | |||||| |||||| ||   ||
Sbjct  711  CACTTGTTCTAATTTGATCCCTAGGGGTGT-C-T-CAAATCACAAATGGTACCTTCAAAA  767

Query  735  GTTCAAGGAAGAGTATCCCAAGACTCGTAAAGCTGTTATTCCTTTTGTGTACTGA  789
            |||    || || ||||| ||||   | |||||||||||||| ||| | ||||||
Sbjct  768  GTTTGCAGAGGACTATCCTAAGAACAGAAAAGCTGTTATTCCATTTATTTACTGA  822


 Score = 47.3 bits (25),  Expect = 1e-04
 Identities = 49/61 (80%), Gaps = 0/61 (0%)
 Strand=Plus/Plus

Query  154  GCTTGGTTCGTCATGGAGAGCCCAACCTTGTGGCTCACTCTCCTCCTCTTCCCCTTTGGT  213
            ||||||||| | |||||||| |||||  | |||||| |   |||||||||||| | ||||
Sbjct  187  GCTTGGTTCCTGATGGAGAGTCCAACACTCTGGCTCTCCGCCCTCCTCTTCCCTTATGGT  246

Query  214  C  214
            |
Sbjct  247  C  247



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 24688844888


  Database: Asclepias_curassavica_v1.0_CDs.fa
    Posted date:  Apr 9, 2024  2:34 PM
  Number of letters in database: 33,043,242
  Number of sequences in database:  29,120



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5