BLASTP 2.11.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Asclepias_syriaca_v0.3_proteins.fa
           43,035 sequences; 19,571,512 total letters



Query= Untitled_sequence

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

AS06g010300.1.1(joined) (translated)                                  701     0.0  


>AS06g010300.1.1 (joined) (translated)
Length=463

 Score = 701 bits (1809),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 355/462 (77%), Positives = 405/462 (88%), Gaps = 4/462 (1%)

Query  2    DMSSMAGSIGVSVAVLRFLLCFVATIPVSFACRIVPSRLGKHLYAAASGAFLSYLSFGFS  61
            +M +MA +IGVSV VLRFLLCFVATIPVSF  R VP   G+HLYAA SGA LSYLSFGFS
Sbjct  5    EMEAMASTIGVSVPVLRFLLCFVATIPVSFFHRFVPGVTGRHLYAAVSGAVLSYLSFGFS  64

Query  62   SNLHFLVPMTIGYASMAIYRPKCGIITFFLGFAYLIGCHVFYMSGDAWKEGGIDSTGALM  121
            SNLHFLVPM +GYASM + R  CGIIT+FLGF YLIGCHV+YMSGDAWKEGGID+TGALM
Sbjct  65   SNLHFLVPMLLGYASMVLCRKYCGIITYFLGFGYLIGCHVYYMSGDAWKEGGIDATGALM  124

Query  122  VLTLKVISCSMNYNDGMLKEEGLREAQKKNRLIQMPSLIEYFGYCLCCGSHFAGPVYEMK  181
            V+TLK+IS  +NYNDG+ KEE LRE+QKKNRLI++PSL+EYFGYCLCCGSHFAGPVYEMK
Sbjct  125  VITLKIISAVINYNDGLCKEENLRESQKKNRLIKLPSLLEYFGYCLCCGSHFAGPVYEMK  184

Query  182  DYLEWTEGKGIWDTTEKRKKPSPYGATIRAILQAAICMALYLYLVPQYPLTRFTEPVYQE  241
            DYL+W E KGIW  +EK   PSPY  T+RA++QAA+CM LYLYLVPQ+PL+RF  P+YQE
Sbjct  185  DYLDWIERKGIWQPSEK-GSPSPYLPTLRALIQAAVCMGLYLYLVPQFPLSRFNHPIYQE  243

Query  242  WGFLRKFSYQYMAGFTARWKYYFIWSISEASIIISGLGFSGWTDDASPKPKWDRAKNVDI  301
            WGF ++  YQYM+GFTARWKYYFIWSISEASIIISGLGFSGWTD +  KP+WDRAKNVD+
Sbjct  244  WGFWKRLGYQYMSGFTARWKYYFIWSISEASIIISGLGFSGWTDSSPHKPRWDRAKNVDV  303

Query  302  LGVELAKSAVQIPLVWNIQVSTWLRHYVYERLVQNGKKAGFFQLLATQTVSAVWHGLYPG  361
            LGVELAKS+VQ+PLVWNIQVSTWLRHYVY+RLVQNGKK GF QLLATQTVSAVWHGLYPG
Sbjct  304  LGVELAKSSVQLPLVWNIQVSTWLRHYVYDRLVQNGKKPGFLQLLATQTVSAVWHGLYPG  363

Query  362  YMMFFVQSALMIAGSRVIYRWQQAISPKMAMLRNIMVFINFLYTVLVLNYSAVGFMVLSL  421
            Y++FFVQSALMIAGSRV+YRWQQA S    +L+N  V +NF YT+LVLNYS VGF+VLSL
Sbjct  364  YLIFFVQSALMIAGSRVLYRWQQATS--TTVLKNFFVLMNFAYTLLVLNYSCVGFLVLSL  421

Query  422  HETLTAYGSVYYIGTIIPVGLILLSYVV-PAKPSRPKPRKEE  462
            HETL +YGSVYY+GTIIP+ LI+LS ++ PAKPSR K RKE+
Sbjct  422  HETLASYGSVYYVGTIIPILLIILSKIIKPAKPSRSKARKEQ  463



Lambda      K        H        a         alpha
   0.326    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5343489512


  Database: Asclepias_syriaca_v0.3_proteins.fa
    Posted date:  Jun 11, 2021  2:00 PM
  Number of letters in database: 19,571,512
  Number of sequences in database:  43,035



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40