BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Asclepias_curassavica_genome_v1.0.fasta 213 sequences; 206,076,041 total letters Query= HiC_scaffold_13:9178101-9182000 Length=3900 Score E Sequences producing significant alignments: (Bits) Value HiC_scaffold_13 7203 0.0 HiC_scaffold_1 86.1 1e-14 >HiC_scaffold_13 Length=18851256 Score = 7203 bits (3900), Expect = 0.0 Identities = 3900/3900 (100%), Gaps = 0/3900 (0%) Strand=Plus/Plus Query 1 TAATGAAATTTCTCCATGCCAGATCAAACTCAACCTGTAAACTAGCTTCCAGGTTAATTT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9178101 TAATGAAATTTCTCCATGCCAGATCAAACTCAACCTGTAAACTAGCTTCCAGGTTAATTT 9178160 Query 61 CGGTGCCTTGCAGGACTGACAGGTCCTTTTTTTTTTTCTTCCATTTCTTGTTAATATAAC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9178161 CGGTGCCTTGCAGGACTGACAGGTCCTTTTTTTTTTTCTTCCATTTCTTGTTAATATAAC 9178220 Query 121 ATTTTCTTGTGAAATAAAGGGAGGATTTTTGTTGCTTTATCTTCCAATTTACAATACCTT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9178221 ATTTTCTTGTGAAATAAAGGGAGGATTTTTGTTGCTTTATCTTCCAATTTACAATACCTT 9178280 Query 181 TATCACGTGACAGAATTCAGAAGGAGAATAAAAGTCCTAGCTTTTGCAGTAGTAAGAAAC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9178281 TATCACGTGACAGAATTCAGAAGGAGAATAAAAGTCCTAGCTTTTGCAGTAGTAAGAAAC 9178340 Query 241 TCGAGAATTTTGAATAACAAAATAATATATATCTTAACATCTTGGATTGGTTATAGTAAT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9178341 TCGAGAATTTTGAATAACAAAATAATATATATCTTAACATCTTGGATTGGTTATAGTAAT 9178400 Query 301 TTTTACAAATAATTTGAATCATGTGGATGTTGTTATAGATTCATTCATTGACATTTATGA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9178401 TTTTACAAATAATTTGAATCATGTGGATGTTGTTATAGATTCATTCATTGACATTTATGA 9178460 Query 361 CATGTTTTCTTCTGGTCAATGAAATAAATTCATTCAAAGAAAGCATGGAGAGCAGGAGCT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9178461 CATGTTTTCTTCTGGTCAATGAAATAAATTCATTCAAAGAAAGCATGGAGAGCAGGAGCT 9178520 Query 421 TCTTTGGTAACTTCAAATTTAAGGGTTTTTTTTTGTTAAACTTTATAGTATCTATAGTAT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9178521 TCTTTGGTAACTTCAAATTTAAGGGTTTTTTTTTGTTAAACTTTATAGTATCTATAGTAT 9178580 Query 481 AGGATTTTGAATAATTTAGATTCTATAATAACACACATTTATAATATGCTTTTTCATGGC 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9178581 AGGATTTTGAATAATTTAGATTCTATAATAACACACATTTATAATATGCTTTTTCATGGC 9178640 Query 541 GATAATTTAGGGGTTTTTTCGGCTGTCGGAATAAAGGGGTGGTGGATGGAAGAAGAAGAT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9178641 GATAATTTAGGGGTTTTTTCGGCTGTCGGAATAAAGGGGTGGTGGATGGAAGAAGAAGAT 9178700 Query 601 GGTGGATACTGTGTATCATTTAAGAGCTTAGCTGTCTACAATATTAGCTTTAGCACAAAA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9178701 GGTGGATACTGTGTATCATTTAAGAGCTTAGCTGTCTACAATATTAGCTTTAGCACAAAA 9178760 Query 661 AAGCCTTTAGGTATCTGTCTCTACATTCTGATTACTTACCATAAATATTGCCTTATTTGT 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9178761 AAGCCTTTAGGTATCTGTCTCTACATTCTGATTACTTACCATAAATATTGCCTTATTTGT 9178820 Query 721 TTTGGTAAGCATAATTTCTATAAATATATTCTTACATAGAAATAAATAATTTTAAATATG 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9178821 TTTGGTAAGCATAATTTCTATAAATATATTCTTACATAGAAATAAATAATTTTAAATATG 9178880 Query 781 GAAAGTGCTTTATGTCACATTTAAAACATGACTAAATAAATAATTTCACAATCTTATAAC 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9178881 GAAAGTGCTTTATGTCACATTTAAAACATGACTAAATAAATAATTTCACAATCTTATAAC 9178940 Query 841 ATAAAATCAGATAATGTTATTATTTTTAAAGTTATAAATAAAATTGAAGTTTTAATAAAA 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9178941 ATAAAATCAGATAATGTTATTATTTTTAAAGTTATAAATAAAATTGAAGTTTTAATAAAA 9179000 Query 901 TATAAGTTTTTTAAATAATACCTAATATTAGAAAAAAAAAGTTATTTATTCAAATAAAAA 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179001 TATAAGTTTTTTAAATAATACCTAATATTAGAAAAAAAAAGTTATTTATTCAAATAAAAA 9179060 Query 961 TAATAAAGATTAAAAAATGATAAAATTAAAAATTATATGTAATTGAATAAAATTTAAAGA 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179061 TAATAAAGATTAAAAAATGATAAAATTAAAAATTATATGTAATTGAATAAAATTTAAAGA 9179120 Query 1021 CAAACACGTAAATACACAAAAACTGAAGGACTAAGTAGGTTAGTTTCATAGAAAGTAAAT 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179121 CAAACACGTAAATACACAAAAACTGAAGGACTAAGTAGGTTAGTTTCATAGAAAGTAAAT 9179180 Query 1081 ACAGAGCAGACAAGAGTCAGTAATTGATTTCAGTTCAATTTGCACACAAGCATTAACGAA 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179181 ACAGAGCAGACAAGAGTCAGTAATTGATTTCAGTTCAATTTGCACACAAGCATTAACGAA 9179240 Query 1141 GCTGATGTGACTCAACTGCAAGAGTTAAATGCCATTTGATGGTGGTTGAAAGTTTAATTA 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179241 GCTGATGTGACTCAACTGCAAGAGTTAAATGCCATTTGATGGTGGTTGAAAGTTTAATTA 9179300 Query 1201 ATTTCAAGAACTCGTAATAATTACTCCATTGCATATAAGACATCCTAGGATTATTAAATT 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179301 ATTTCAAGAACTCGTAATAATTACTCCATTGCATATAAGACATCCTAGGATTATTAAATT 9179360 Query 1261 ATTTCACTAATTTATTTATGATTCTAACACTTTATACTTATGGTTGAAAAGTGCTTCATT 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179361 ATTTCACTAATTTATTTATGATTCTAACACTTTATACTTATGGTTGAAAAGTGCTTCATT 9179420 Query 1321 TATAATTACTTACATATGCTAAAAAACAAATTGTTTGTTTTTTGTTTTTGGGTCAATCTG 1380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179421 TATAATTACTTACATATGCTAAAAAACAAATTGTTTGTTTTTTGTTTTTGGGTCAATCTG 9179480 Query 1381 ACATGATGGTGTGATGGTAATATGTTGAAAATCTCGAGGTCGAACTTTAAGACGAGTTCT 1440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179481 ACATGATGGTGTGATGGTAATATGTTGAAAATCTCGAGGTCGAACTTTAAGACGAGTTCT 9179540 Query 1441 TTATATATATATATGTGTGTATGTGTGTGTGTGAAGTTCTTGAATACCATACAAAAATTT 1500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179541 TTATATATATATATGTGTGTATGTGTGTGTGTGAAGTTCTTGAATACCATACAAAAATTT 9179600 Query 1501 CAACTTCATCTGTCAGCCATGCAGAACTTGGCATTTTCACGCATCACTATCAAACCATCT 1560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179601 CAACTTCATCTGTCAGCCATGCAGAACTTGGCATTTTCACGCATCACTATCAAACCATCT 9179660 Query 1561 GCAAGAACGCCACCTGGCTTCAACAACCCACCGAAAAAACATGCTGGATTCCTCCGCCGG 1620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179661 GCAAGAACGCCACCTGGCTTCAACAACCCACCGAAAAAACATGCTGGATTCCTCCGCCGG 9179720 Query 1621 CACCTACTACCACCCGTCACAGCGGCGCCAGCGCCGTTACGATACCAAACGTGCACCAAT 1680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179721 CACCTACTACCACCCGTCACAGCGGCGCCAGCGCCGTTACGATACCAAACGTGCACCAAT 9179780 Query 1681 CAAGAAGACTCAATGCCACCGGAGAAAGTTGAAGTCTTTAAATCGTTGGAGAATTGGGCA 1740 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179781 CAAGAAGACTCAATGCCACCGGAGAAAGTTGAAGTCTTTAAATCGTTGGAGAATTGGGCA 9179840 Query 1741 TCCCACCGGGTCCTACCGTTACTCAAACCCGTCGAAAAATCCTGGCAACCCATTGATTTT 1800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179841 TCCCACCGGGTCCTACCGTTACTCAAACCCGTCGAAAAATCCTGGCAACCCATTGATTTT 9179900 Query 1801 CTCCCGAACCCGGCTCAAAATTCGGAGGATTTCGCCGACGAAGTCCGCCAGTTGCGTGAA 1860 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179901 CTCCCGAACCCGGCTCAAAATTCGGAGGATTTCGCCGACGAAGTCCGCCAGTTGCGTGAA 9179960 Query 1861 CGGACTTCTCAACTTCCCGATGACTACTTTGTGGTGCTCGTCGGTGACATGATCACCGAA 1920 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9179961 CGGACTTCTCAACTTCCCGATGACTACTTTGTGGTGCTCGTCGGTGACATGATCACCGAA 9180020 Query 1921 GAAGCTCTGCCTACTTACCAGAGCATGTTGAACAGATTCGACGGCATTCGTGACGAAACC 1980 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180021 GAAGCTCTGCCTACTTACCAGAGCATGTTGAACAGATTCGACGGCATTCGTGACGAAACC 9180080 Query 1981 GGTGCTAGTCCTTCCCCTTGGGCTTCTTGGATTCGTTCTTGGACTGCCGAAGAAAATAGA 2040 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180081 GGTGCTAGTCCTTCCCCTTGGGCTTCTTGGATTCGTTCTTGGACTGCCGAAGAAAATAGA 9180140 Query 2041 CATGGCGATTTACTTCGTACTTATCTCTATCTTTCCGGTAGAGTTGACATGCAGATGATT 2100 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180141 CATGGCGATTTACTTCGTACTTATCTCTATCTTTCCGGTAGAGTTGACATGCAGATGATT 9180200 Query 2101 GACCGGACAATCCAATTCTTGATTAGCTCTGGGATGGTAACGTTACATACCCCATTTGAT 2160 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180201 GACCGGACAATCCAATTCTTGATTAGCTCTGGGATGGTAACGTTACATACCCCATTTGAT 9180260 Query 2161 CAATTTTCATTTGAACAAAATAATATTTGAGTAATTATTATTATTTAATTTGTTTGTGAT 2220 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180261 CAATTTTCATTTGAACAAAATAATATTTGAGTAATTATTATTATTTAATTTGTTTGTGAT 9180320 Query 2221 ATTAATTAATTAGGACACTGGAATAGCGAAAAATCCATATTTAGGATTTGTGTACACATC 2280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180321 ATTAATTAATTAGGACACTGGAATAGCGAAAAATCCATATTTAGGATTTGTGTACACATC 9180380 Query 2281 ATTTCAAGAGCGAGCCACATTCGTGTCACATGGAAACACGGCTCGGCTAGCCAAGGAAGG 2340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180381 ATTTCAAGAGCGAGCCACATTCGTGTCACATGGAAACACGGCTCGGCTAGCCAAGGAAGG 9180440 Query 2341 CGGGGATCCAGTGCTTGCGAGGATATGCGGTACGATTGCAGCCGACGAGAAGCGTCACGA 2400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180441 CGGGGATCCAGTGCTTGCGAGGATATGCGGTACGATTGCAGCCGACGAGAAGCGTCACGA 9180500 Query 2401 GAACGCTTACTCTATGGTATTTGAAAAATTACTGGAAGTAGATCCGAATGGTGCCATGCT 2460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180501 GAACGCTTACTCTATGGTATTTGAAAAATTACTGGAAGTAGATCCGAATGGTGCCATGCT 9180560 Query 2461 GGCAATAGGTGATATGATGAGAAAGAAAATCAAAATGCCAGCTCATCTCATGTACGACGG 2520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180561 GGCAATAGGTGATATGATGAGAAAGAAAATCAAAATGCCAGCTCATCTCATGTACGACGG 9180620 Query 2521 ACAGGATCCTAATTTGTTCGAGCACTTCGCCGCCGTCACTCAACGTCTCGGAGTTTACAC 2580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180621 ACAGGATCCTAATTTGTTCGAGCACTTCGCCGCCGTCACTCAACGTCTCGGAGTTTACAC 9180680 Query 2581 CGCCGGCGACTATGCTGACATCCTTGAGTTCTTGATTGGGCGGTGGAATTTGGAAAAGAT 2640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180681 CGCCGGCGACTATGCTGACATCCTTGAGTTCTTGATTGGGCGGTGGAATTTGGAAAAGAT 9180740 Query 2641 TCAAGGCTTGACGGCTGAAGCTAATTCTGCACAGGACTTTGTTTGTGGGCTGCCACCTAG 2700 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180741 TCAAGGCTTGACGGCTGAAGCTAATTCTGCACAGGACTTTGTTTGTGGGCTGCCACCTAG 9180800 Query 2701 GATGAGGAAGTTGCAAGGGAGAGCCGATCAGCGAGCCAAGAAGCTGCAGCCTAAAGGGGT 2760 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180801 GATGAGGAAGTTGCAAGGGAGAGCCGATCAGCGAGCCAAGAAGCTGCAGCCTAAAGGGGT 9180860 Query 2761 TAAATTTAGCTGGATCTTTAATAAGGAAGTGGTTTTCTGATCTTTTCTTTACTGGGGGGT 2820 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180861 TAAATTTAGCTGGATCTTTAATAAGGAAGTGGTTTTCTGATCTTTTCTTTACTGGGGGGT 9180920 Query 2821 TCGAATTGAATATAACAGAATATTTGGGGGTATATTTGAAACTTAAGTTTTGTTGTATAC 2880 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180921 TCGAATTGAATATAACAGAATATTTGGGGGTATATTTGAAACTTAAGTTTTGTTGTATAC 9180980 Query 2881 TGACAGAACAATTTTACCATATATATCTGTAATATTATATGATAAATAAAACTATAGTTT 2940 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9180981 TGACAGAACAATTTTACCATATATATCTGTAATATTATATGATAAATAAAACTATAGTTT 9181040 Query 2941 CTATTCTAATTATTATTATTATAAAAGACTAAAGTAACATTGCATTAAGGTAAATACAAA 3000 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9181041 CTATTCTAATTATTATTATTATAAAAGACTAAAGTAACATTGCATTAAGGTAAATACAAA 9181100 Query 3001 AAAAGAAAAAAGAAAAAAGAAAAACGCAAAACGCGAAACACAAGTTTTTGTTTTTATAGG 3060 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9181101 AAAAGAAAAAAGAAAAAAGAAAAACGCAAAACGCGAAACACAAGTTTTTGTTTTTATAGG 9181160 Query 3061 TTGGCCCCACATATTCTGCATGCATTTAATTCAAGTCCCACAAAATAAAATTTTCACAAA 3120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9181161 TTGGCCCCACATATTCTGCATGCATTTAATTCAAGTCCCACAAAATAAAATTTTCACAAA 9181220 Query 3121 TATAGCTCCTTATTAAAGATCCAGCTAAATTTCACTCCAGTCGTGGTCCGGAGCTTCTTG 3180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9181221 TATAGCTCCTTATTAAAGATCCAGCTAAATTTCACTCCAGTCGTGGTCCGGAGCTTCTTG 9181280 Query 3181 GCTCGCTCGTCAGCTTTCTCTTGTAACCTCCTCATCCTAGGAGCTAGTCCACACACGAAC 3240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9181281 GCTCGCTCGTCAGCTTTCTCTTGTAACCTCCTCATCCTAGGAGCTAGTCCACACACGAAC 9181340 Query 3241 TCTTGTGCACGTCTCGCATCATCCGTCAAACCCTCGAGCTTCTCTAATCTCCACCGTTGA 3300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9181341 TCTTGTGCACGTCTCGCATCATCCGTCAAACCCTCGAGCTTCTCTAATCTCCACCGTTGA 9181400 Query 3301 ATTAAAAATTCAAGAATGTCTGCATAATCTCCGGCAGTATAAACCCCGAGTCGTTGGGCT 3360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9181401 ATTAAAAATTCAAGAATGTCTGCATAATCTCCGGCAGTATAAACCCCGAGTCGTTGGGCT 9181460 Query 3361 ACAGCCGAGAAATGAGCGAACAGATTCGGATCTTGGCCGTCGTACATTAGATGAGCCGGC 3420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9181461 ACAGCCGAGAAATGAGCGAACAGATTCGGATCTTGGCCGTCGTACATTAGATGAGCCGGC 9181520 Query 3421 ATTGTAATTTTCATTCTCATCATTTCACCTATGGCTAACATGGCTCCGCTCGGATCCACT 3480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9181521 ATTGTAATTTTCATTCTCATCATTTCACCTATGGCTAACATGGCTCCGCTCGGATCCACT 9181580 Query 3481 TCGACTAATTTCTCGACGATTCTCGAGTAAGCACTCTCGTGGCGCTTCTCGTCGGATGCA 3540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9181581 TCGACTAATTTCTCGACGATTCTCGAGTAAGCACTCTCGTGGCGCTTCTCGTCGGATGCA 9181640 Query 3541 ATTGAACCACATATCTTGGCTAGCACAGGATCCCCTCTCTCCTTGGCGAGCCGAGCCGTA 3600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9181641 ATTGAACCACATATCTTGGCTAGCACAGGATCCCCTCTCTCCTTGGCGAGCCGAGCCGTA 9181700 Query 3601 TTACCATGTGACACAAATGTGGCTCGCTCTTGGAATGACGTGTACACAAATCCAAAATAG 3660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9181701 TTACCATGTGACACAAATGTGGCTCGCTCTTGGAATGACGTGTACACAAATCCAAAATAG 9181760 Query 3661 GGATTTCTATTTGTACCAGTATTCTTAATTAATTACCAAAAAGGATAAAACAAAAAAAAA 3720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9181761 GGATTTCTATTTGTACCAGTATTCTTAATTAATTACCAAAAAGGATAAAACAAAAAAAAA 9181820 Query 3721 AAAAAAAGTCAATAAATTTTGAATTGACCAAATTGGGCTCGAAATTGAAAGCGAAATTAA 3780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9181821 AAAAAAAGTCAATAAATTTTGAATTGACCAAATTGGGCTCGAAATTGAAAGCGAAATTAA 9181880 Query 3781 GAAACGTACCATGCCGGAACTAAGTAAATATTGGATAGTTTTGTCAATCATTGTCATGTC 3840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9181881 GAAACGTACCATGCCGGAACTAAGTAAATATTGGATAGTTTTGTCAATCATTGTCATGTC 9181940 Query 3841 AACTCTGCCGGAAAGGTAAAGATAAGTCTTGAGTAAATCGCCGTGACGGTTTTCTTCCGC 3900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9181941 AACTCTGCCGGAAAGGTAAAGATAAGTCTTGAGTAAATCGCCGTGACGGTTTTCTTCCGC 9182000 Score = 547 bits (296), Expect = 1e-153 Identities = 848/1116 (76%), Gaps = 32/1116 (3%) Strand=Plus/Minus Query 1694 TGCCACCGGAGAAAGTTGAAGTCTTTAAATCGTTGGAGAATTGGGCATCCCACCGGGTCC 1753 |||||||||| |||||| || ||||||| || | || ||||||| |||| |||| Sbjct 9182332 TGCCACCGGAAAAAGTTCAAATCTTTAAGTCACTAGAATCTTGGGCAACCCAAAATGTCC 9182273 Query 1754 TACCGTTACTCAAACCCGTCGAAAAATCCTGGCAACCCATTGATTTTCTCCCGAACCCGG 1813 | || | ||||||||||| || ||||| |||||||||| || || ||||||||||||| Sbjct 9182272 TTCCCCTTCTCAAACCCGTTGAGAAATCATGGCAACCCACCGAATTCCTCCCGAACCCGG 9182213 Query 1814 CTCAAAATTCGGAGGATTTCGCCGACGAAGT-C-CGCCAGTTGCGTGAACGGACTTCTCA 1871 |||| |||| || |||||| |||| ||||| | |||| | ||| | || || || | Sbjct 9182212 CTCAGAATTTCGATGATTTCACCGAAGAAGTTCGCGCC--CTCCGTCACCGTACCTCCGA 9182155 Query 1872 ACTTCCCGATGACTACTTTGTGGTGCTCGTCGGTGACATGATCACCGAAGAAGCTCTGCC 1931 ||||||||||| ||||| || || || |||||||||||||| || |||||||| |||| Sbjct 9182154 TCTTCCCGATGAGTACTTGGTCGTTCTTGTCGGTGACATGATTACGGAAGAAGCATTGCC 9182095 Query 1932 TACTTACCAGAGCATGTTGAACAGATTCGACGGCATTCGTGACGAAACCGGTGCTAGTCC 1991 ||||| || || ||| | |||||| | |||||| || || || || || ||| || | Sbjct 9182094 AACTTATCAAAGTATGATTAACAGACTTGACGGCGTTAAGGATGAGACGGGAGCTTGTAC 9182035 Query 1992 TTCCCCTTGGGCTTCTTGGATTCGTTCTTGGACTGCCGAAGAAAATAGACATGGCGATTT 2051 ||||||||||||| ||||| || ||||||| || |||||||| | || |||||||| Sbjct 9182034 TTCCCCTTGGGCTATTTGGACACGAGCTTGGACGGCGGAAGAAAACCGTCACGGCGATTT 9181975 Query 2052 ACTTCGTACTTATCTCTATCTTTCCGGTAGAGTTGACATG-CAGATGATTGACCGGACAA 2110 ||| |||||||| || |||||||| |||||||||||| || ||||||||| || | Sbjct 9181974 ACTCAAGACTTATCTTTACCTTTCCGGCAGAGTTGACATGACA-ATGATTGACAAAACTA 9181916 Query 2111 TCCAATTCTTGATTAGCTCTGGGATGGTAACGTTAC---A-TAC-C---CCATTT-GA-- 2159 |||||| || |||| || || |||||| |||| | | | | | | |||| || Sbjct 9181915 TCCAATATTTACTTAGTTCCGGCATGGTA-CGTTTCTTAATTTCGCTTTCAATTTCGAGC 9181857 Query 2160 TCAATTT--TCATTTGAACAAAATAATATTTGA-GTAATTATTATTATTTAATTTGT-TT 2215 |||||| ||| || |||||| || |||| | || || || ||| ||| | | Sbjct 9181856 CCAATTTGGTCAATT---CAAAAT-TTA-TTGACTTTTTTTTTTTTTTTTGTTTTATCCT 9181802 Query 2216 GTGATATTAATTAATTA-GGACACTGGAATAGCGAAAAATCCATATTTAGGATTTGTGTA 2274 | | |||||||||| | | ||||| | | | |||||| ||||| ||||||||||| Sbjct 9181801 TT-TTGGTAATTAATTAAGAATACTGGTACAAATAGAAATCCCTATTTTGGATTTGTGTA 9181743 Query 2275 CACATCATTTCAAGAGCGAGCCACATTCGTGTCACATGGAAACACGGCTCGGCTAGCCAA 2334 ||| ||||| ||||||||||||||||| ||||||||||| || ||||||||||| ||||| Sbjct 9181742 CACGTCATTCCAAGAGCGAGCCACATTTGTGTCACATGGTAATACGGCTCGGCTCGCCAA 9181683 Query 2335 GGAAGGCGGGGATCCAGTGCTTGCGAGGATATGCGGTACGATTGCAGCCGACGAGAAGCG 2394 ||| | |||||||| ||||| || | |||||| ||| | |||||| ||||||||||||| Sbjct 9181682 GGAGAGAGGGGATCCTGTGCTAGCCAAGATATGTGGTTCAATTGCATCCGACGAGAAGCG 9181623 Query 2395 TCACGAGAACGCTTACTCTATGGTATTTGAAAAATTACTGGAAGTAGATCCGAATGGTGC 2454 ||||||| |||||||| | | | || |||||| | ||||| ||||||| || || Sbjct 9181622 CCACGAGAGTGCTTACTCGAGAATCGTCGAGAAATTAGTCGAAGTGGATCCGAGCGGAGC 9181563 Query 2455 CATGCTGGCAATAGGTGATATGATGAGAAAGAAAATCAAAATGCCAGCTCATCTCATGTA 2514 |||| | || |||||||| |||||||||| |||||| | |||||| |||||||| ||||| Sbjct 9181562 CATGTTAGCCATAGGTGAAATGATGAGAATGAAAATTACAATGCCGGCTCATCTAATGTA 9181503 Query 2515 CGACGGACAGGATCCTAATTTGTTCGAGCACTTCGCCGCCGTCACTCAACGTCTCGGAGT 2574 |||||| || ||||| ||| |||||| || ||| | || || | ||||| ||||| || Sbjct 9181502 CGACGGCCAAGATCCGAATCTGTTCGCTCATTTCTCGGCTGTAGCCCAACGACTCGGGGT 9181443 Query 2575 TTACACCGCCGGCGACTATGCTGACATCCTTGAGTTCTTGATTGGGCGGTGGAATTTGGA 2634 ||| || ||||| || ||||| ||||| ||||| || || ||| ||||||| || || Sbjct 9181442 TTATACTGCCGGAGATTATGCAGACATTCTTGAATTTTTAATTCAACGGTGGAGATTAGA 9181383 Query 2635 AAAGATTCAAGGCTTGACGGCTGAAGCTAATTCTGCACAGGACTTTGTTTGTGGGCTGCC 2694 ||| | | || ||||||| ||| || | |||||| || || || ||||| || | Sbjct 9181382 GAAGCTCGAGGGTTTGACGGATGATGCGAGACGTGCACAAGAGTTCGTGTGTGGACTAGC 9181323 Query 2695 ACCTAGGATGAGGAAGTTGCAAGGGAGAGCCGATCAGCGAGCCAAGAAGCT--GCAGC-C 2751 ||||||||||||| ||| |||| || ||| || |||||||||||||||| | | | | Sbjct 9181322 TCCTAGGATGAGGAGGTTACAAGAGAAAGCTGACGAGCGAGCCAAGAAGCTCCGGACCAC 9181263 Query 2752 TAAAGGGGTTAAATTTAGCTGGATCTTTAATAAGGA 2787 | || || |||||||||||||||||||||||||| Sbjct 9181262 GACTGGAGTGAAATTTAGCTGGATCTTTAATAAGGA 9181227 Score = 372 bits (201), Expect = 7e-101 Identities = 593/782 (76%), Gaps = 28/782 (4%) Strand=Plus/Minus Query 3127 TCCTTATTAAAGATCCAGCTAAATTTCACTCCAGTCGTGGTCCGGAGCTTCTTGGCTCGC 3186 |||||||||||||||||||||||||| || || | | | | | ||||||||||||||| Sbjct 9180887 TCCTTATTAAAGATCCAGCTAAATTTAACCCCTTTAG-GCTGC--AGCTTCTTGGCTCGC 9180831 Query 3187 TCGTCAGCTTTCTCTTGTAACCTCCTCATCCTAGGAGCTAGTCCACACACGAACTCTTGT 3246 | || ||| || |||| ||| ||||||||||||| | || ||||| || || || ||| Sbjct 9180830 TGATCGGCTCTCCCTTGCAACTTCCTCATCCTAGGTGGCAGCCCACAAACAAAGTCCTGT 9180771 Query 3247 GCACGTCTCGCATCATCCGTCAAACCCTCGAGCTTCTCTAATCTCCACCGTTGAATTAAA 3306 ||| | || ||| ||||||| || | | ||| || || ||||||| ||| || Sbjct 9180770 GCAGAATTAGCTTCAGCCGTCAAGCCTTGAATCTTTTCCAAATTCCACCGCCCAATCAAG 9180711 Query 3307 AATTCAAGAATGTCTGCATAATCTCCGGCAGTATAAACCCCGAGTCGTTGGGCTACAGCC 3366 || ||||| ||||| ||||| || ||||| || ||||| ||||| ||||| | || || Sbjct 9180710 AACTCAAGGATGTCAGCATAGTCGCCGGCGGTGTAAACTCCGAGACGTTGAGTGACGGCG 9180651 Query 3367 GAGAAATGAGCGAACAGATTCGGATCTTGGCCGTCGTACATTAGATGAGCCGGCATTGTA 3426 | ||| || |||||| ||| ||||| || ||||||||||| |||||||| |||||| | Sbjct 9180650 GCGAAGTGCTCGAACAAATTAGGATCCTGTCCGTCGTACATGAGATGAGCTGGCATTTTG 9180591 Query 3427 ATTTTCATTCTCATCATTTCACCTATGGCTAACATGGCTCCGCTCGGATCCACTTCGACT 3486 |||||| |||||||||| |||||||| || | |||||| || ||||||| ||||| | | Sbjct 9180590 ATTTTCTTTCTCATCATATCACCTATTGCCAGCATGGCACCATTCGGATCTACTTCCAGT 9180531 Query 3487 AATTTCTCGACGATTCTCGAGTAAGCACTCTCGTGGCGCTTCTCGTCGGATGCAATTGAA 3546 ||||| || | | | |||||||| ||||||| ||||||||||||| |||||| | | Sbjct 9180530 AATTTTTCAAATACCATAGAGTAAGCGTTCTCGTGACGCTTCTCGTCGGCTGCAATCGTA 9180471 Query 3547 CCACATATCTTGGCTAGCACAGGATCCCCTCTCTCCTTGGCGAGCCGAGCCGTATTACCA 3606 || |||||| | || ||||| |||||||| | |||||||| ||||||||||| || ||| Sbjct 9180470 CCGCATATCCTCGCAAGCACTGGATCCCCGCCTTCCTTGGCTAGCCGAGCCGTGTTTCCA 9180411 Query 3607 TGTGACACAAATGTGGCTCGCTCTTGGAATGACGTGTACACAAATCCAAAATAGGGATTT 3666 |||||||| ||||||||||||||||| ||||| |||||||||||||| ||||| |||||| Sbjct 9180410 TGTGACACGAATGTGGCTCGCTCTTGAAATGATGTGTACACAAATCCTAAATATGGATTT 9180351 Query 3667 CTATTTGTACCAGTATTCTTAATTAATTACCAA-AAAGGATAAAACAAAAAAAAAAAAAA 3725 | | | ||||| | || ||||||||| | | | | ||| ||| || || || Sbjct 9180350 TTCGCTATTCCAGTGTCCT-AATTAATTAATATCACAA-ACAAATTAAATAATAATAATT 9180293 Query 3726 AAGTCAA-TAA-ATTTTG---AATTGACCAAATTGGGCTCGAAATTGAAAGCGAAATTAA 3780 | |||| || |||||| || ||| |||||| || |||| | | | | | Sbjct 9180292 AC-TCAAATATTATTTTGTTCAAATGA--AAATTGA--TC-AAATGG---G-GTA-T--- 9180247 Query 3781 GAAACG-TACCATGCCGGAACTAAGTAAATATTGGATAGTTTTGTCAATCAT-TGTCATG 3838 | |||| |||||| || || |||| || ||||||| || ||||||||| || |||| Sbjct 9180246 GTAACGTTACCATCCCAGAGCTAATCAAGAATTGGATTGTCCGGTCAATCATCTG-CATG 9180188 Query 3839 TCAACTCTGCCGGAAAGGTAAAGATAAGTCTTGAGTAAATCGCCGTGACGGTTTTCTTCC 3898 |||||||| |||||||| || |||||||| ||||||||||| || | |||||||| Sbjct 9180187 TCAACTCTACCGGAAAGATAGAGATAAGTACGAAGTAAATCGCCATGTCTATTTTCTTCG 9180128 Query 3899 GC 3900 || Sbjct 9180127 GC 9180126 >HiC_scaffold_1 Length=19001867 Score = 86.1 bits (46), Expect = 1e-14 Identities = 193/266 (73%), Gaps = 2/266 (1%) Strand=Plus/Minus Query 1874 TTCCCGATGACTACTTTGTGGTGCTCGTCGGTGACATGATCACCGAAGAAGCTCTGCCTA 1933 |||| |||||||| ||||| ||| | || || || ||||| || || ||||| || || | Sbjct 8587134 TTCCTGATGACTATTTTGTTGTGTTAGTTGGAGATATGATTACAGAGGAAGCACTTCCAA 8587075 Query 1934 CTTACCAGAGCATGTTGAACAGATTCGACGGCATTCGTGACGAAACCGGTGCTAGTCCT- 1992 ||||||||| ||| | || | | || || |||| ||||| || ||||| || ||| Sbjct 8587074 CTTACCAGACAATGCTTAATACCCTTGATGGAGTTCGAGACGAGACAGGTGCCAG-CCTA 8587016 Query 1993 TCCCCTTGGGCTTCTTGGATTCGTTCTTGGACTGCCGAAGAAAATAGACATGGCGATTTA 2052 | |||||||| ||||| | | | |||||||| || || ||||| ||||| || | Sbjct 8587015 ACTTCTTGGGCTATTTGGACTAGGGCATGGACTGCAGAGGAGAATAGGCATGGTGACCTC 8586956 Query 2053 CTTCGTACTTATCTCTATCTTTCCGGTAGAGTTGACATGCAGATGATTGACCGGACAATC 2112 ||| | ||||| |||||||| ||||||||||| ||| | |||||| ||| || Sbjct 8586955 CTTAACAAATATCTTTATCTTTCTGGTAGAGTTGATATGAGGCAGATTGAAAAGACGATT 8586896 Query 2113 CAATTCTTGATTAGCTCTGGGATGGT 2138 || | | | ||| ||||||| ||||| Sbjct 8586895 CAGTACCTTATTGGCTCTGGCATGGT 8586870 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 797696443544 Database: Asclepias_curassavica_genome_v1.0.fasta Posted date: Jun 11, 2021 2:01 PM Number of letters in database: 206,076,041 Number of sequences in database: 213 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5